User:Wiestcar

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
unacceptable	YEASO:E7NHF2	2014-04-01 11:47:30 CDT	GO:0032007 negative regulation of TOR signaling (P)	PMID:20530756	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 4B shows that when Saccharomyces cerevisiae loses the gene Ncs6p, it loses the ability to grow when grown with rapamycin.	challenge
unacceptable	ARATH:F4IU18	2014-04-01 12:04:11 CDT	GO:0032006 regulation of TOR signaling (Figure 4 shows that when Ncs6p is removed, there is no growth in the presence of rapamycin but when rol5 is added, growth begins again.)	PMID:20530756	IMP: Inferred from Mutant Phenotype		challenge
unacceptable	ARATH:FUT6	2014-04-01 13:32:19 CDT	GO:0036065 fucosylation (P)	PMID:24127514	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 5 shows that when fut6 is removed from the plant, the root cells do not grow as long as wild type when grown in the presence of NaCl	challenge
unacceptable	ARATH:B3GT1	2014-04-01 18:47:46 CDT	GO:0080022 primary root development (P)	PMID:23527103	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 4 shows that when A. thaliana is grown as a mutant with GalT1, there is an increase in primary root length than wild type. It also appears to have more bio mass.	challenge
unacceptable	ARATH:B3GT1	2014-04-01 19:02:11 CDT	GO:0015995 chlorophyll biosynthetic process (P)	PMID:23527103	ECO:0000314 direct assay evidence used in manual assertion	Figure 5 shows higher chlorophyll content at different wavelengths when A. thaliana is grown with over expression of GalT1.	challenge
unacceptable	ARATH:B3GT1	2014-04-02 17:10:19 CDT	GO:0045489 pectin biosynthetic process (P)	PMID:23527103	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 10 shows that in the over-expression of GalT1 in A. thaliana, there is an up-regulation of other proteins responsible for the production of pectin.	challenge
unacceptable	VERFO:D2XRB6	2014-04-02 21:16:44 CDT	GO:0048316 seed development (P)	PMID:24516650	ECO:0000314 direct assay evidence used in manual assertion	Figure 4 shows that as the weeks go by of seed development, the levels of OLE1 increases drastically in V. fordii compared to other proteins.	challenge

acceptable:0
unacceptable:7
requires_changes:0
flagged:0

Annotations challenged by Wiestcar

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
updatedbyinstructor	NathanTFix, Team Designer Genes	HUMAN:HIF1A	GO:0005634 - nucleus (C)	PMID:22848707	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 1
updatedbyinstructor	Bmanieri, Team Chicken Day	HUMAN:COGA1	GO:0033622 - integrin activation (P)	PMID:16754661	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 2
requireschanges	John.p.schmidt, The A Team	BIFAP:K4IP48	GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity (F)	PMID:9931298	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 2
unacceptable	Fclingen, Team What the Fox Says	HUMAN:BRD4	GO:0008284 - positive regulation of cell population proliferation (P)	PMID:24403256	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 1
updatedbyinstructor	Min.lorna, Team Ood	PSEAE:BEKAS	GO:0042758 - long-chain fatty acid catabolic process (P)	PMID:22753057	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 1
unacceptable	Asigurdsson, Team On a Boat	RAT:ASIC2	GO:0005261 - monoatomic cation channel activity (F)	PMID:8631835	ECO:0000266 sequence orthology evidence used in manual assertion	challenge	C: 3
unacceptable	Grolfe, Team Pancakes At Nite	HUMAN:CIB1	GO:0005515 - protein binding (F)	PMID:20473878	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 2
updatedbyinstructor	Grolfe, Team Pancakes At Nite	HUMAN:PLS1	GO:0005730 - nucleolus (C)	PMID:24356419	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 2

0 annotations fixed by Wiestcar

What do the icons mean in the status column?