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Category:Team Designer Genes

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StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
updatedbyinstructorHUMAN:HIF1ANathanTFix, Team Designer Genes2014-04-06 16:35:59 CDTGO:0005634 nucleus (C)PMID:22848707ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
requireschangesHUMAN:ATF1NicoleNThorndal, Team Designer Genes2014-04-06 16:05:03 CDTGO:0001077 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (F)PMID:24224056ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 3, using Figure 4 for binding.

challenge
unacceptableEBVB9:RTAMow11, Team Designer Genes2014-03-30 20:14:06 CDTGO:0019046 release from viral latency (P)PMID:21325409ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1 A-C: Three different cell lines were transfected with plasmids for the over-expression of Na (which is the product of gene BRRF1) as well as control plasmids with no over-expression of Na. To see if Na initiated lysis in the cells in which Na was overproduced, immunoassays were performed to search for lytic cell products. The proteins searched for include BMRF1, Z protein, R protein, Na (through FLAG), and β-actin. In all three types of cells with plasmids over-expressing BRRF1, these lytic proteins were found in a greater amount than in the cells without the over-expression plasmids. Expression of BRRF1 leads to a product that affects maintenance of viral latency. The evidence code is IMP because there is over-expression of the gene. Presence of the gene product resulted

challenge
unacceptableHUMAN:ZEB2Vaidkrizna, Team Designer Genes2014-03-23 15:55:20 CDTGO:0003700 sequence-specific DNA binding transcription factor activity (F)PMID:16959974ECO:0000314 direct assay evidence used in manual assertion

Interacting selectively and non-covalently with an E-box, a DNA motif with the consensus sequence CANNTG that is found in the promoters of a wide array of genes expressed in neurons, muscle and other tissues

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unacceptableHUMAN:ZEB1Vaidkrizna, Team Designer Genes2014-03-23 15:53:06 CDTGO:0044212 transcription regulatory region DNA binding (F)PMID:20036349ECO:0000314 direct assay evidence used in manual assertion

Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon

challenge
unacceptableHUMAN:HIF1ANathanTFix, Team Designer Genes2014-03-23 14:29:50 CDTGO:0001666 response to hypoxia (P)PMID:22848707ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 6. Shows a favoring of aerobic glycolysis in the immortalized lymphoblastoid cell lines (LCL) when compared to both CD40+IL4 activated cells and newly Epstein-Barr Virus-infected B-cells. In addition to the increased levels of lactate and pyruvate, increased ROS levels were found in LCL's in comparison to the CD40+IL4 and EBV B-Cell cell lines.

challenge
unacceptableEBVB9:RTAMow11, Team Designer Genes2014-03-23 14:28:16 CDTGO:0019046 release from viral latency (P)PMID:21325409ECO:0000315 mutant phenotype evidence used in manual assertion

BRLF1 is a transcriptional activator that mediates the switch from latent to lytic viral replication.

Figure 1 A-C: Three different cell lines were transfected with plasmids for the over-expression of Na (which is the product of gene BRRF1) as well as control plasmids with no over-expression of Na. To see if Na initiated lysis in the cells in which Na was overproduced, immunoassays were performed to search for lytic cell products. The proteins searched for include BMRF1, Z protein, R protein, Na (through FLAG), and β-actin. In all three types of cells with plasmids over-expressing BRRF1, these lytic proteins were found in a greater amount than in the cells without the over-expression plasmids. Expression of BRRF1 leads to a product that affects maintenance of viral latency. The evidence code is IMP because there is over-expression of the gene. Presence of the gene product resulted in an increase in specific lytic proteins measured by an immunoblot assay.

challenge
unacceptableEBVB9:RTAMow11, Team Designer Genes2014-03-23 14:16:42 CDTGO:0019046 release from viral latency (P)PMID:1ECO:0000315 mutant phenotype evidence used in manual assertion

BRLF1 is a transcriptional activator that mediates the switch from latent to lytic viral replication.

Figure 1 A-C: Three different cell lines were transfected with plasmids for the over-expression of Na (which is the product of gene BRRF1) as well as control plasmids with no over-expression of Na. To see if Na initiated lysis in the cells in which Na was overproduced, immunoassays were performed to search for lytic cell products. The proteins searched for include BMRF1, Z protein, R protein, Na (through FLAG), and β-actin. In all three types of cells with plasmids over-expressing BRRF1, these lytic proteins were found in a greater amount than in the cells without the over-expression plasmids. Expression of BRRF1 leads to a product that affects maintenance of viral latency. The evidence code is IMP because there is over-expression of the gene. Presence of the gene product resulted in an increase in specific lytic proteins measured by an immunoblot assay.

challenge
updatedbyinstructorEBVB9:BZLF1NicoleNThorndal, Team Designer Genes2014-03-23 10:42:26 CDTGO:0045893 positive regulation of transcription, DNA-templated (P)PMID:23135711ECO:0000314 direct assay evidence used in manual assertion

Fig 1: DNA methylation enhances BZLF1 transactivation of most early lytic EBV promoters. This proves BZLF1 has a major affect on EBV entering the lytic cycle.

challenge
unacceptableMOUSE:ZP1Kateablack, Team Designer Genes2014-03-22 19:51:53 CDTGO:0007339 binding of sperm to zona pellucida (P)PMID:22472438ECO:0000314 direct assay evidence used in manual assertion

The Z2 element of the Z protein acts as a secondary sperm receptor and is expressed primary to ovulation of the oocyte. The Z2 element consists of 745 amino acids.

challenge
unacceptableMOUSE:ZP1Kateablack, Team Designer Genes2014-03-22 19:51:52 CDTGO:0007339 binding of sperm to zona pellucida (P)PMID:11906903ECO:0000314 direct assay evidence used in manual assertion

Fig. 1 An electron micrograph shows the internal structure of Zp.

challenge
updatedbyinstructorEBVB9:LF2ElizabethASchultz, Team Designer Genes2014-03-21 10:40:53 CDTGO:0010629 negative regulation of gene expression (P)PMID:17446270ECO:0000314 direct assay evidence used in manual assertion

As shown in Figure 2, LF2 represses Rta activation of four different EBV promoters

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Pages in category "Team Designer Genes"

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