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User:NicoleNThorndal

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CACAO Spring 2014

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
updatedbyinstructorEBVB9:BZLF12014-03-23 10:42:26 CDTGO:0045893 positive regulation of transcription, DNA-templated (P)PMID:23135711ECO:0000314 direct assay evidence used in manual assertion

Fig 1: DNA methylation enhances BZLF1 transactivation of most early lytic EBV promoters. This proves BZLF1 has a major affect on EBV entering the lytic cycle.

challenge
requireschangesHUMAN:ATF12014-04-06 16:05:03 CDTGO:0001077 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (F)PMID:24224056ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 3, using Figure 4 for binding.

challenge

acceptable:0
unacceptable:0
requires_changes:1
flagged:0

Annotations challenged by NicoleNThorndal

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history
unacceptableHLDose,
Team DRPs
NITEU:CYCXGO:0016491 - oxidoreductase activity (F)PMID:8195067ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1
unacceptableRachael.Masset,
Team A5
STAA4:D3EUQ4GO:0007155 - cell adhesion (

Used in agglutination Processes (Fg) induces agglutination of S. aureus wildtype strains similarly to 2.5% HP. Mutants in arlRS were unable to agglutinate with Fg.

)
PMID:13278487IMP: Inferred from Mutant Phenotype challengeC: 1
unacceptableAstephens2,
Team Bacon Pancakes
HUMAN:FADDGO:0031264 - death-inducing signaling complex (C)PMID:7536190ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 3
unacceptableAstephens2,
Team Bacon Pancakes
HUMAN:FADDPMID:14702039ECO:0000314 direct assay evidence used in manual assertionchallengeC: 2
unacceptableAstephens2,
Team Bacon Pancakes
HUMAN:FADDPMID:7538907ECO:0000247 sequence alignment evidence used in manual assertionchallengeC: 4
unacceptableAstephens2,
Team Bacon Pancakes
HUMAN:SHBGPMID:2587256ECO:0000247 sequence alignment evidence used in manual assertionchallengeC: 3
updatedbyinstructorNicoleNThorndal,
Team Designer Genes
EBVB9:BZLF1GO:0045893 - positive regulation of DNA-templated transcription (P)PMID:23135711ECO:0000314 direct assay evidence used in manual assertionchallengeC: 3

fixed by NicoleNThorndal

1 annotations fixed by NicoleNThorndal

What do the icons mean in the status column?

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