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User:Astephens2

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CACAO Spring 2014

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptableHUMAN:FADD2014-01-30 20:43:05 CSTPMID:7538907ECO:0000247 sequence alignment evidence used in manual assertion

Analysis of data using Northern blotting, sequence alignment and expression vectors

challenge
unacceptableHUMAN:FADD2014-01-30 20:50:26 CSTGO:0031264 death-inducing signaling complex (C)PMID:7536190ECO:0000315 mutant phenotype evidence used in manual assertion

Northern and Sequence Analyses

challenge
unacceptableHUMAN:FADD2014-01-30 20:58:05 CSTPMID:14702039ECO:0000314 direct assay evidence used in manual assertion

Sequence analysis

challenge
unacceptableHUMAN:FADD2014-01-30 21:04:30 CSTPMID:10825539ECO:0000247 sequence alignment evidence used in manual assertion

Analysis of Sequence ALignment, Figure 2

challenge
unacceptableHUMAN:FADD2014-01-30 21:09:59 CSTPMID:9582077ECO:0000247 sequence alignment evidence used in manual assertion

Analysis from FIgure 1 Northern blotting, and Figure 3 Sequence Alignment

challenge
unacceptableHUMAN:SHBG2014-01-30 22:29:06 CSTPMID:2587256ECO:0000247 sequence alignment evidence used in manual assertion

Analysis of Paper. See Figure 1. Gel Electrophoresis

challenge
unacceptableHUMAN:SHBG2014-01-30 22:44:55 CSTGO:0007285 primary spermatocyte growth (P)PMID:3569533ECO:0000255 match to sequence model evidence used in manual assertion

See Figure 2. It shows the amino acid sequence of SHBG gotten from the sequence of its cDNA.

challenge
unacceptableHUMAN:SHBG2014-01-30 22:57:19 CSTGO:0007285 primary spermatocyte growth (P)PMID:2956126ECO:0000255 match to sequence model evidence used in manual assertion

Analysis of Paper. See Figure 1(b). Shows the Amino acid sequences determined by peptides. Those generated from SHBG are underlined

challenge
unacceptableHUMAN:SHBG2014-01-30 23:06:32 CSTGO:0007285 primary spermatocyte growth (P)PMID:12065592ECO:0000255 match to sequence model evidence used in manual assertion

Analysis of Paper. See Figure 2. Shows images of the human SHBG steroid-binding site

challenge
unacceptableHUMAN:SHBG2014-01-30 23:17:21 CSTGO:0007285 primary spermatocyte growth (P)PMID:10675319ECO:0000247 sequence alignment evidence used in manual assertion

Analysis from article. See Figure 4. Shows the multiple sequence alignment of the G domain which is part of he SHBG family

challenge

acceptable:0
unacceptable:10
requires_changes:0
flagged:0

Annotations challenged by Astephens2

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history
unacceptableSirons,
Team Takin This Outside
HUMAN:TAUGO:0007015 - actin filament organization (P)GO_REF:0000019ECO:0000314 direct assay evidence used in manual assertionchallengeC: 2
unacceptableCsobelman,
Team Lobster Soul
HUMAN:P53GO:0000075 - cell cycle checkpoint signaling (P)Reactome:REACT_1538ECO:0000314 direct assay evidence used in manual assertionchallengeC: 3
unacceptableWtrimble,
Team Pnut Butter Squares
HUMAN:PTPRUGO:0016791 - phosphatase activity (F)PMID:24260274ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1
unacceptableKgoldthorn,
Team Takin This Outside
HUMAN:TTBK1GO:0016301 - kinase activity (F)PMID:17344846ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1
unacceptableKgoldthorn,
Team Takin This Outside
HUMAN:TTBK2GO:0004672 - protein kinase activity (F)PMID:21548880ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1
updatedbyinstructorWtrimble,
Team Pnut Butter Squares
HUMAN:DNLI4GO:0003910 - DNA ligase (ATP) activity (F)PMID:22192310ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1
unacceptableSirons,
Team Takin This Outside
HUMAN:TTBK1GO:0005737 - cytoplasm (C)PMID:17344846ECO:0000247 sequence alignment evidence used in manual assertionchallengeC: 2
unacceptableSirons,
Team Takin This Outside
HUMAN:TAUGO:0007015 - actin filament organization (P)GO_REF:0000019ECO:0000314 direct assay evidence used in manual assertionchallengeC: 2
requireschangesDruelas,
Team BGOW
HHV11:PORTLGO:0042025 - host cell nucleus (C)PMID:21593161ECO:0000314 direct assay evidence used in manual assertionchallengeC: 4
updatedbyinstructorJcameron,
Team Food Rewards
RAT:MK08GO:0097050 - type B pancreatic cell apoptotic process (P)PMID:24475223ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 3

0 annotations fixed by Astephens2

What do the icons mean in the status column?

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