User:John.p.schmidt

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
requireschanges	BIFAP:K4IP48	2014-03-01 13:57:17 CST	GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity (F)	PMID:9931298	ECO:0000314 direct assay evidence used in manual assertion	Table 2	challenge
unacceptable	BIFAP:K4IQP9	2014-03-01 13:59:21 CST	GO:0004802 transketolase activity (F)	PMID:24114639	ECO:0000314 direct assay evidence used in manual assertion	See Table II of associated PMID	challenge
unacceptable	BIFAP:K4ILU2	2014-03-01 14:00:57 CST	GO:0004777 succinate-semialdehyde dehydrogenase (NAD+) activity (F)	PMID:17873044	ECO:0000314 direct assay evidence used in manual assertion	See Figure 1 of associated PMID	challenge
unacceptable	ECOLI:CH60	2014-03-01 14:02:41 CST	GO:1990220 GroEL-GroES complex (C)	PMID:23437010	ECO:0000314 direct assay evidence used in manual assertion	See Figure 1 of associated PMID	challenge
unacceptable	BIFAP:K4INZ2	2014-03-01 14:04:02 CST	GO:0006457 protein folding (P)	PMID:7900997	ECO:0000314 direct assay evidence used in manual assertion	See Figure 1(A) of associated PMID	challenge
unacceptable	LACLM:6PGD	2014-03-23 09:43:57 CDT	GO:0006525 arginine metabolic process (P)	PMID:9931298	ECO:0000315 mutant phenotype evidence used in manual assertion	As shown on page 57, "The role of the L. lactis 6-PGDH Arg-447 in binding of substrate" paragraph of the associated PMID:"Despite the fact that the mutated [6-PGDH] enzymes were all soluble... none had any activity whatsoever... confirming that this [Arginine] residue plays a critical role in activity."	challenge
unacceptable	STRVR:Q9RIL1	2014-03-23 09:46:18 CDT	GO:0010468 regulation of gene expression (P)	PMID:24498397	ECO:0000315 mutant phenotype evidence used in manual assertion	Refer to Table S1, "Proteins differentially expressed in S. viridochromogenes WT and MacnA due to oxidative stress treatment identified by MALDI TOF/TOF"	challenge
unacceptable	ECOCB:D3QWY4	2014-03-23 09:48:30 CDT	GO:0045040 protein import into mitochondrial outer membrane (P)	PMID:24628810	ECO:0000314 direct assay evidence used in manual assertion	Refer to Figure 3, "Deletion of major OMP's reduces activation of sigma-E envelope stress response"	challenge
unacceptable	STREE:L0SPW7	2014-03-23 09:50:20 CDT	GO:1990220 GroEL-GroES complex (Refer to Figure 2, "Improved modeling of anisotropy with TLS refinement")	PMID:15313620	IDA: Inferred from Direct Assay		challenge
unacceptable	ECOLI:NQOR	2014-03-23 16:25:00 CDT	GO:0010275 NAD(P)H dehydrogenase complex assembly (P)	PMID:24587082	ECO:0000314 direct assay evidence used in manual assertion	Refer to Figure 3, "Cell survival after exposure to uranyl at acidic pH"	challenge

acceptable:0
unacceptable:9
requires_changes:1
flagged:0

Annotations challenged by John.p.schmidt

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by John.p.schmidt

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