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Category:Team Free Thinkers

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SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesBREST:CHODKimahrom, Team Free Thinkers2012-04-15 14:50:00 CDTGO:0055114 oxidation-reduction process (P)PMID:17560744ECO:0000315 mutant phenotype evidence used in manual assertion

figure 1

choE is synonym of choB

challenge
updatedbyinstructorYEAST:MET16Litunghi, Team Free Thinkers2012-04-13 13:13:43 CDTGO:0006750 glutathione biosynthetic process (P)PMID:22234534ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 2 shows MET16 strain has higher level of glutathione produced.

challenge
requireschangesHUMAN:GLSKKimahrom, Team Free Thinkers2012-04-13 10:03:58 CDTGO:0004359 glutaminase activity (F)PMID:10719215ECO:0000247 sequence alignment evidence used in manual assertion

figure 3

challenge
acceptableHUMAN:NOS1Kimahrom, Team Free Thinkers2012-04-13 09:59:38 CDTGO:0004517 nitric-oxide synthase activity (F)PMID:1689048ECO:0000314 direct assay evidence used in manual assertion

figure 3

challenge
acceptableHUMAN:ARGI2Kimahrom, Team Free Thinkers2012-04-13 09:53:10 CDTGO:0004053 arginase activity (F)PMID:16128822ECO:0000315 mutant phenotype evidence used in manual assertion

figure 2

challenge
requireschangesHUMAN:ARGI1Kimahrom, Team Free Thinkers2012-04-12 20:15:58 CDTGO:0004053 arginase activity (F)PMID:3540966ECO:0000247 sequence alignment evidence used in manual assertion

figure 4

challenge
updatedbyinstructorYEAST:GEF1Litunghi, Team Free Thinkers2012-04-10 23:09:13 CDTGO:0034756 regulation of iron ion transport (P)PMID:9520490ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 2 shows different levels of iron uptake between wild type and gef1 mutants.

challenge
updatedbyinstructorYEAST:SEN2Litunghi, Team Free Thinkers2012-04-10 23:03:53 CDTGO:0000213 tRNA-intron endonuclease activity (F)PMID:17352735ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 2 shows sen2 gave least amount of pre-tRNA, i.e. shows the tRNA splicing function of the gene.

challenge
acceptableHYPJE:O93785Litunghi, Team Free Thinkers2012-04-10 22:57:13 CDTGO:0008422 beta-glucosidase activity (F)PMID:12200312ECO:0000314 direct assay evidence used in manual assertion

Table 2.

challenge
acceptableEMENI:MAAILitunghi, Team Free Thinkers2012-04-10 22:51:16 CDTGO:0016034 maleylacetoacetate isomerase activity (F)PMID:9417084ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 5

challenge
acceptableHERSS:D8ITX3Kimahrom, Team Free Thinkers2012-04-10 11:18:32 CDTGO:0006808 regulation of nitrogen utilization (P)PMID:21223584ECO:0000315 mutant phenotype evidence used in manual assertion

figure 2

challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableVIBCH:TOXRKimahrom, Team Free Thinkers2012-03-27 12:49:41 CDTGO:0000156 two-component response regulator activity (F)PMID:21542860ECO:0000314 direct assay evidence used in manual assertion

figure 1, This suggests the ToxR-V71A mutation affects a region of ToxR that is especially important for ToxR to directly activate the ompU promoter, but less critical when ToxR plays an accessory role with TcpP to activate the toxT promoter

figure 3. Gel-shift assays to assess promoter recognition by various ToxR mutant proteins identified in a random mutagenesis ompU-sacB selection strategy.

challenge

Pages in category "Team Free Thinkers"

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