GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

Category:Team Awesome Panthers

From GONUTS
Jump to: navigation, search

SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableSALTY:RFAFPaxhiami, Team Awesome Panthers2012-04-15 17:24:02 CDTGO:0009244 lipopolysaccharide core region biosynthetic process (P)PMID:8157607ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 - LPS profile of strains by SDS-PAGE. Mutant phenotype of ∆rfaF (lane 2) was restored to wildtype by complementing with an rfaF plasmid (lane 1).

challenge
acceptableSALTY:RFACPaxhiami, Team Awesome Panthers2012-04-15 17:16:32 CDTGO:0009244 lipopolysaccharide core region biosynthetic process (P)PMID:1527014ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5 - LPS profile of strains by SDS-PAGE. Mutant phenotype of ∆rfaC (lane 4) was restored to wildtype by complementing with an rfaC plasmid (lane 5).

challenge
requireschangesENTFC:Q9EZQ9Barnesgr, Team Awesome Panthers2012-04-15 14:27:49 CDTGO:0016805 dipeptidase activity (F)PMID:15388450ECO:0000314 direct assay evidence used in manual assertion

Table 6 shows the dipeptidase activity of enterococci with VanD.

challenge
unacceptableENTFC:Q9EZQ9Barnesgr, Team Awesome Panthers2012-04-15 14:25:01 CDTGO:0046677 response to antibiotic (P)PMID:15388450ECO:0000314 direct assay evidence used in manual assertion

Table 2 shows that enterococci with VanD have high minimum inhibitory concentrations (MIC) of vancomycin.

challenge
requireschangesENTFC:A1JV20Barnesgr, Team Awesome Panthers2012-04-15 00:39:21 CDTGO:0046677 response to antibiotic (P)PMID:7867956ECO:0000314 direct assay evidence used in manual assertion

Table 2 shows that cells transformed with plasmids containing vanY have higher minimum inhibitory concentrations (MIC) of vancomycin than cells without vanY.

challenge
requireschangesENTFC:VANZBarnesgr, Team Awesome Panthers2012-04-15 00:27:10 CDTGO:0046677 response to antibiotic (P)PMID:7867956ECO:0000314 direct assay evidence used in manual assertion

Table 2 shows that cells with plasmids containing the vanZ gene have a higher minimum inhibitory concentration of teicoplanin than cells without the vanZ gene.

challenge
requireschangesSTAA1:MECABarnesgr, Team Awesome Panthers2012-04-14 22:37:58 CDTGO:0046677 response to antibiotic (P)PMID:2708325ECO:0000314 direct assay evidence used in manual assertion

Fig. 2 shows the production of penicillin binding protein (PBP) in strains of Staphylococcus aureus transformed with pSP53 with the mecA gene.

challenge
requireschangesSTAAU:MECIBarnesgr, Team Awesome Panthers2012-04-14 15:28:01 CDTGO:0006355 regulation of transcription, DNA-dependent (P)PMID:9555900ECO:0000314 direct assay evidence used in manual assertion

Table 2 shows that in cells transformed with mecI, the beta-galactosidase activity of mecA-lacZ transcriptional fusion can be induced with the presence of CBAP. Furthermore, it is shown in Fig. 2 that mecI binds to a region of DNA between the mecA and mecR1 genes and protects it from DNase.

challenge
acceptableSTAAU:BLAIBarnesgr, Team Awesome Panthers2012-04-14 14:47:52 CDTGO:0010468 regulation of gene expression (P)PMID:8517704ECO:0000314 direct assay evidence used in manual assertion

Fig. 2 shows that expression PBP 2a and beta-lactamase was repressed in cells transformed with blaI, but PBP 2a and beta-lactamase were expressed constitutively in untransformed cells. Furthermore, expression in transformed cells could be induced.

challenge
requireschangesECOLI:RFAQPaxhiami, Team Awesome Panthers2012-04-14 13:58:39 CDTGO:0009244 lipopolysaccharide core region biosynthetic process (P)PMID:9756860ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 - Gas chromatograph of expressed core oligosaccharide. waaQ (3c) mutant expresses a truncated core, missing the terminal heptose (peak 6) as compared to wildtype (3a).

challenge
requireschangesECOLI:RFAQPaxhiami, Team Awesome Panthers2012-04-14 13:54:33 CDTGO:0008920 lipopolysaccharide heptosyltransferase activity (F)PMID:9756860ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 - Gas Chromatograph of core oligosaccharide. Compared to wildtype (3a), waaQ mutant (3c) is missing peak 6 (terminal heptose).

challenge
acceptableECOLI:RFACPaxhiami, Team Awesome Panthers2012-04-14 12:51:15 CDTGO:0009244 lipopolysaccharide core region biosynthetic process (P)PMID:8478319ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4a - LPS profile of strains by SDS-PAGE. Mutant phenotype of rfa-2 mutant strain (lane 3) was restored to wildtype by complementing with an rfa-2 plasmid (lane 1).

challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableECOLI:RFAFPaxhiami, Team Awesome Panthers2012-03-29 13:44:35 CDTGO:0008713 ADP-heptose-lipopolysaccharide heptosyltransferase activity (F)PMID:11054112ECO:0000314 direct assay evidence used in manual assertion

Figure 3 - Product in the presence of RfaF contains an additional heptose attached to Hep-Kdo2. Product in the absence of RfaF only contains Hep-Kdo2.

challenge
acceptableECOLI:RFACPaxhiami, Team Awesome Panthers2012-03-29 13:40:17 CDTGO:0008920 lipopolysaccharide heptosyltransferase activity (F)PMID:11054112ECO:0000314 direct assay evidence used in manual assertion

Figure 3 - Product in the presence of RfaC contains an additional heptose attached to Kdo2. Product in the absence of RfaC only contains Kdo2.

challenge
acceptableENTFC:VANABarnesgr, Team Awesome Panthers2012-03-29 11:59:25 CDTGO:0008716 D-alanine-D-alanine ligase activity (F)PMID:1931965ECO:0000314 direct assay evidence used in manual assertion

Fig. 2 is a TLC showing the D-alanine-D-alanine ligase activity of VanA. In the presence of VanA, the TLC shows that [14C]D-alanine is converted to [14C]D-alanine-D-alanine. In the absence of VanA, [14C]D-alanine does not form [14C]D-alanine-D-alanine.

challenge

Pages in category "Team Awesome Panthers"

The following 2 pages are in this category, out of 2 total.


Jump to pages starting with: B P