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SALTY:RFAF
Contents
Species (Taxon ID) | Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720). (99287) | |
Gene Name(s) | rfaF (synonyms: waaF) | |
Protein Name(s) | ADP-heptose--LPS heptosyltransferase 2
ADP-heptose--LPS heptosyltransferase II | |
External Links | ||
UniProt | P37421 | |
EMBL | U06472 AE006468 | |
RefSeq | NP_462611.1 WP_000699190.1 | |
ProteinModelPortal | P37421 | |
SMR | P37421 | |
STRING | 99287.STM3711 | |
CAZy | GT9 | |
PaxDb | P37421 | |
PRIDE | P37421 | |
DNASU | 1255235 | |
EnsemblBacteria | AAL22570 | |
GeneID | 1255235 | |
KEGG | stm:STM3711 | |
PATRIC | 32386257 | |
eggNOG | COG0859 | |
HOGENOM | HOG000237541 | |
KO | K02843 | |
OMA | CLKQRHP | |
OrthoDB | EOG64N9TX | |
PhylomeDB | P37421 | |
BioCyc | SENT99287:GCTI-3736-MONOMER | |
UniPathway | UPA00958 | |
Proteomes | UP000001014 | |
GO | GO:0016757 GO:0009244 | |
InterPro | IPR002201 IPR011910 | |
Pfam | PF01075 | |
TIGRFAMs | TIGR02195 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0009244 |
lipopolysaccharide core region biosynthetic process |
ECO:0000315 |
P |
Figure 3 - LPS profile of strains by SDS-PAGE. Mutant phenotype of ∆rfaF (lane 2) was restored to wildtype by complementing with an rfaF plasmid (lane 1). |
complete | |||||
involved_in |
GO:0009244 |
lipopolysaccharide core region biosynthetic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009244 |
lipopolysaccharide core region biosynthetic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11189 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0008713 |
ADP-heptose-lipopolysaccharide heptosyltransferase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12210 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12210 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009103 |
lipopolysaccharide biosynthetic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016757 |
transferase activity, transferring glycosyl groups |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009103 |
lipopolysaccharide biosynthetic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016757 |
transferase activity, transferring glycosyl groups |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009244 |
lipopolysaccharide core region biosynthetic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniPathway:UPA00958 |
P |
Seeded From UniProt |
complete | ||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Sirisena, DM et al. (1994) Molecular analysis of the rfaD gene, for heptose synthesis, and the rfaF gene, for heptose transfer, in lipopolysaccharide synthesis in Salmonella typhimurium. J. Bacteriol. 176 2379-85 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page