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SALTY:RFAF

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Species (Taxon ID) Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720). (99287)
Gene Name(s) rfaF (synonyms: waaF)
Protein Name(s) ADP-heptose--LPS heptosyltransferase 2

ADP-heptose--LPS heptosyltransferase II

External Links
UniProt P37421
EMBL U06472
AE006468
RefSeq NP_462611.1
WP_000699190.1
ProteinModelPortal P37421
SMR P37421
STRING 99287.STM3711
CAZy GT9
PaxDb P37421
PRIDE P37421
DNASU 1255235
EnsemblBacteria AAL22570
GeneID 1255235
KEGG stm:STM3711
PATRIC 32386257
eggNOG COG0859
HOGENOM HOG000237541
KO K02843
OMA CLKQRHP
OrthoDB EOG64N9TX
PhylomeDB P37421
BioCyc SENT99287:GCTI-3736-MONOMER
UniPathway UPA00958
Proteomes UP000001014
GO GO:0016757
GO:0009244
InterPro IPR002201
IPR011910
Pfam PF01075
TIGRFAMs TIGR02195

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0009244

lipopolysaccharide core region biosynthetic process

PMID:8157607[1]

ECO:0000315

P

Figure 3 - LPS profile of strains by SDS-PAGE. Mutant phenotype of ∆rfaF (lane 2) was restored to wildtype by complementing with an rfaF plasmid (lane 1).

complete
CACAO 4446

involved_in

GO:0009244

lipopolysaccharide core region biosynthetic process

PMID:8157607[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009244

lipopolysaccharide core region biosynthetic process

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG11189
EcoGene:EG11341
EcoGene:EG11423
EcoGene:EG12210
PANTHER:PTN001575314
UniProtKB:G3XD35
UniProtKB:P26469
UniProtKB:P37421
UniProtKB:Q9HUF5

P

Seeded From UniProt

complete

enables

GO:0008713

ADP-heptose-lipopolysaccharide heptosyltransferase activity

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG12210
PANTHER:PTN001575314

F

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG12210
PANTHER:PTN001575314

C

Seeded From UniProt

complete

involved_in

GO:0009103

lipopolysaccharide biosynthetic process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011910

P

Seeded From UniProt

complete

enables

GO:0016757

transferase activity, transferring glycosyl groups

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002201
InterPro:IPR011910

F

Seeded From UniProt

complete

involved_in

GO:0009103

lipopolysaccharide biosynthetic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0448

P

Seeded From UniProt

complete

enables

GO:0016757

transferase activity, transferring glycosyl groups

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0328

F

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

involved_in

GO:0009244

lipopolysaccharide core region biosynthetic process

GO_REF:0000041

ECO:0000322

imported manually asserted information used in automatic assertion

UniPathway:UPA00958

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Sirisena, DM et al. (1994) Molecular analysis of the rfaD gene, for heptose synthesis, and the rfaF gene, for heptose transfer, in lipopolysaccharide synthesis in Salmonella typhimurium. J. Bacteriol. 176 2379-85 PubMed GONUTS page
  2. 2.0 2.1 2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page