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ECOLI:RFAF
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | rfaF (synonyms: waaF) | |
| Protein Name(s) | ADP-heptose--LPS heptosyltransferase 2
ADP-heptose--LPS heptosyltransferase II | |
| External Links | ||
| UniProt | P37692 | |
| EMBL | U00039 U00096 AP009048 M33577 X62530 | |
| PIR | S47841 | |
| RefSeq | NP_418077.1 YP_491813.1 | |
| PDB | 1PSW | |
| PDBsum | 1PSW | |
| ProteinModelPortal | P37692 | |
| SMR | P37692 | |
| DIP | DIP-10667N | |
| IntAct | P37692 | |
| STRING | 511145.b3620 | |
| CAZy | GT9 | |
| PRIDE | P37692 | |
| DNASU | 948135 | |
| EnsemblBacteria | AAC76644 BAE77672 | |
| GeneID | 12934312 948135 | |
| KEGG | ecj:Y75_p3554 eco:b3620 | |
| PATRIC | 32122727 | |
| EchoBASE | EB2124 | |
| EcoGene | EG12210 | |
| eggNOG | COG0859 | |
| HOGENOM | HOG000237541 | |
| InParanoid | P37692 | |
| KO | K02843 | |
| OMA | CLKQRHP | |
| OrthoDB | EOG64N9TX | |
| PhylomeDB | P37692 | |
| BioCyc | EcoCyc:EG12210-MONOMER ECOL316407:JW3595-MONOMER MetaCyc:EG12210-MONOMER | |
| UniPathway | UPA00958 | |
| EvolutionaryTrace | P37692 | |
| PRO | PR:P37692 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P37692 | |
| GO | GO:0008713 GO:0016757 GO:0009244 | |
| InterPro | IPR002201 IPR011910 | |
| Pfam | PF01075 | |
| TIGRFAMs | TIGR02195 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0008713 |
ADP-heptose-lipopolysaccharide heptosyltransferase activity |
ECO:0000314 |
F |
Figure 3 - Product in the presence of RfaF contains an additional heptose attached to Hep-Kdo2. Product in the absence of RfaF only contains Hep-Kdo2. |
complete | |||||
|
enables |
GO:0008713 |
ADP-heptose-lipopolysaccharide heptosyltransferase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009244 |
lipopolysaccharide core region biosynthetic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11189 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0008713 |
ADP-heptose-lipopolysaccharide heptosyltransferase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12210 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12210 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0009244 |
lipopolysaccharide core region biosynthetic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009244 |
lipopolysaccharide core region biosynthetic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008713 |
ADP-heptose-lipopolysaccharide heptosyltransferase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009103 |
lipopolysaccharide biosynthetic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016757 |
transferase activity, transferring glycosyl groups |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009103 |
lipopolysaccharide biosynthetic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016757 |
transferase activity, transferring glycosyl groups |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009244 |
lipopolysaccharide core region biosynthetic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniPathway:UPA00958 |
P |
Seeded From UniProt |
complete | ||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gronow, S et al. (2000) Comparative functional characterization in vitro of heptosyltransferase I (WaaC) and II (WaaF) from Escherichia coli. Eur. J. Biochem. 267 6602-11 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Brabetz, W et al. (1997) Deletion of the heptosyltransferase genes rfaC and rfaF in Escherichia coli K-12 results in an Re-type lipopolysaccharide with a high degree of 2-aminoethanol phosphate substitution. Eur. J. Biochem. 247 716-24 PubMed GONUTS page
- ↑ Joloba, ML et al. (2004) Activation of the gab operon in an RpoS-dependent manner by mutations that truncate the inner core of lipopolysaccharide in Escherichia coli. J. Bacteriol. 186 8542-6 PubMed GONUTS page
- ↑ Gronow, S et al. (2001) Characterization of the physiological substrate for lipopolysaccharide heptosyltransferases I and II. J. Endotoxin Res. 7 263-70 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
- ↑ Zhang, N et al. (2007) Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Proteomics 7 484-93 PubMed GONUTS page
