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Category:Team Loony Toons

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StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesMOUSE:TRAM2Cthorstenson, Team Loony Toons2013-11-10 17:55:43 CSTGO:0032965 regulation of collagen biosynthetic process (P)PMID:14749390ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 &5. Mutant TRAM2 inhibits collagen synthesis by hepatic stellate cells

challenge
unacceptableMOUSE:TRAM2Cthorstenson, Team Loony Toons2013-11-10 17:55:42 CSTGO:2000489 regulation of hepatic stellate cell activation (P)PMID:14749390ECO:0000314 direct assay evidence used in manual assertion

Figure 2. (and 1)TRAM2 is expressed in activated haptic stellate cells

challenge
acceptableECOLI:SECYKsylvester, Team Loony Toons2013-11-10 17:06:31 CSTGO:0005887 integral to plasma membrane (C)PMID:2538820ECO:0000314 direct assay evidence used in manual assertion

Figure 2 shows PrlA (SecY) is enriched in the plasma membrane by immunoblotting using anti-peptide antisera

challenge
acceptableRAT:Q9Z1X8Cthorstenson, Team Loony Toons2013-11-10 16:43:57 CSTGO:0032839 dendrite cytoplasm (C)PMID:9857061ECO:0000314 direct assay evidence used in manual assertion

Figure 4. NFB42 is cytoplasmic, showing high expression in dendrites in many parts of the brain.

challenge
unacceptableRAT:Q9Z1X8Cthorstenson, Team Loony Toons2013-11-10 16:43:56 CSTGO:0008285 negative regulation of cell proliferation (P)PMID:9857061ECO:0000314 direct assay evidence used in manual assertion

Figure 5. Expression of protein inhibited cell growth

challenge
requireschangesRAT:Q9Z1X8Cthorstenson, Team Loony Toons2013-11-10 16:43:56 CSTGO:0033267 axon part (C)PMID:9857061ECO:0000314 direct assay evidence used in manual assertion

Figure 4. High expression of protein in brain neural axon

challenge
unacceptableRAT:Q9Z1X8Cthorstenson, Team Loony Toons2013-11-10 16:43:56 CSTGO:0044444 cytoplasmic part (C)PMID:9857061ECO:0000314 direct assay evidence used in manual assertion

Figure 4. Majority of expression is seen in the cytoplasm.

challenge
requireschangesRAT:TBB2BCthorstenson, Team Loony Toons2013-11-10 16:05:31 CSTGO:0046785 microtubule polymerization (P)PMID:19465910ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 and Figure 5. TBB2B mutants poorly produce competent heterodimers for microtubule polymerization.

challenge
unacceptableRAT:TBB2BCthorstenson, Team Loony Toons2013-11-10 16:05:31 CSTGO:0001764 neuron migration (P)PMID:19465910ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2. Tubb2b expression was knocked-down by 50% in embryonic cells. This resulted in the arrest of neuron migration.

challenge
unacceptableVIBCH:ZOTCthorstenson, Team Loony Toons2013-11-06 21:33:16 CSTGO:0005923 tight junction (C)PMID:1730472ECO:0000314 direct assay evidence used in manual assertion

Figure 2. When tissues were treated with a permeability marker and different strains of cholera, the strains producing the toxin (inferred from fig 1) showed increased permeability in the tight junctions

challenge
acceptablePHLPR:MPA5BCthorstenson, Team Loony Toons2013-10-27 16:27:51 CDTGO:0004540 ribonuclease activity (F)PMID:7729555ECO:0000314 direct assay evidence used in manual assertion

Fig 3 shows mRNA is degraded by purified Phl p Vb

challenge
acceptableMOUSE:TMED2Cthorstenson, Team Loony Toons2013-10-27 16:05:00 CDTGO:0060716 labyrinthine layer blood vessel development (P)PMID:20178780ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 2. Absence of the labyrinth layer in the mutant phenotype. More specifically as seen in Fig.2 D-F there is no invagination of the allantois into the chorion, which is necessary for the formation of the labyrinth layer, in the mutants like there is in the wild type.

challenge
unacceptableHUMAN:PTBP1Cthorstenson, Team Loony Toons2013-09-29 15:30:57 CDTGO:2000279 negative regulation of DNA biosynthetic process (P)PMID:23536791ECO:0000314 direct assay evidence used in manual assertion

Figure 1c. Decrease in DNA synthesis when increase PTB expression.

challenge
unacceptableERWRD:D9MPF2Dsbarnard, Team Loony Toons2013-09-29 11:24:02 CDTGO:0016853 isomerase activity (F)PMID:24069347ECO:0000314 direct assay evidence used in manual assertion

Figure 2. Shows the crystal structure of native NX-5.

challenge
acceptableERWRD:D9MPF2Dsbarnard, Team Loony Toons2013-09-29 11:24:02 CDTGO:0016853 isomerase activity (F)PMID:24069347ECO:0000315 mutant phenotype evidence used in manual assertion

Table 2. Shows the ratios of isomerization products of NX-5 and mutants used to elucidate the product specificity role of the 10 residue loop adjacent to the catalytic site.

challenge
acceptableYEAST:CTR1Ksylvester, Team Loony Toons2013-09-24 20:51:26 CDTGO:0016021 integral to membrane (C)PMID:8293472ECO:0000314 direct assay evidence used in manual assertion

Figure 3 shows an immunoelectron microscope picture of epitope tagged protein that is located in the membrane where the C-terminus side is inside the cell.

challenge
unacceptable?Ksylvester, Team Loony Toons2013-09-15 17:55:05 CDTGO:0048024 regulation of mRNA splicing, via spliceosome (Figure 3A. loss of HUB1 activity reduces splicing in pus1, sec13, rpa43, and rad24 of Saccharomyces cerevisiae)PMID:15620657IMP: Inferred from Mutant Phenotype
challenge
updatedbyinstructorYEAST:SNU66Ksylvester, Team Loony Toons2013-09-15 17:51:46 CDTGO:0005634 nucleus (C)PMID:15620657ECO:0000314 direct assay evidence used in manual assertion

Figure S4 of the supplementary data indicates nuclear localization of Snu66 in S. cerevisiae.

challenge
unacceptableBACTU:AHLLDsbarnard, Team Loony Toons2013-09-15 13:52:12 CDTGO:0010699 cell-cell signaling involved in quorum sensing (P)PMID:10716724ECO:0000314 direct assay evidence used in manual assertion

Figure 2 shows the AiiA gene product inactivation of autoinducers over time.

challenge

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Pages in category "Team Loony Toons"

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