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YEAST:SNU66
Contents
| Species (Taxon ID) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292) | |
| Gene Name(s) | SNU66 | |
| Protein Name(s) | 66 kDa U4/U6.U5 small nuclear ribonucleoprotein component | |
| External Links | ||
| UniProt | Q12420 | |
| EMBL | X90565 Z75216 BK006948 | |
| PIR | S58319 | |
| RefSeq | NP_014953.3 | |
| PDB | 3PLU 3PLV | |
| PDBsum | 3PLU 3PLV | |
| ProteinModelPortal | Q12420 | |
| BioGrid | 34697 | |
| DIP | DIP-5216N | |
| IntAct | Q12420 | |
| MINT | MINT-519249 | |
| STRING | 4932.YOR308C | |
| MaxQB | Q12420 | |
| PaxDb | Q12420 | |
| EnsemblFungi | [example_ID YOR308C] | |
| GeneID | 854485 | |
| KEGG | sce:YOR308C | |
| CYGD | YOR308c | |
| SGD | S000005835 | |
| eggNOG | NOG268163 | |
| InParanoid | Q12420 | |
| KO | K11984 | |
| OMA | EETNEIR | |
| OrthoDB | EOG74N5S1 | |
| BioCyc | YEAST:G3O-33792-MONOMER | |
| NextBio | 976807 | |
| PRO | PR:Q12420 | |
| Proteomes | UP000002311 | |
| Genevestigator | Q12420 | |
| GO | GO:0005681 GO:0046540 GO:0000481 GO:0000398 | |
| InterPro | IPR005011 | |
| PANTHER | PTHR14152 | |
| Pfam | PF03343 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0005634 |
nucleus |
ECO:0000314 |
C |
Figure S4 of the supplementary data indicates nuclear localization of Snu66 in S. cerevisiae. |
complete | |||||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0046540 |
U4/U6 x U5 tri-snRNP complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0046540 |
U4/U6 x U5 tri-snRNP complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003674 |
molecular_function |
ECO:0000307 |
no biological data found used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000481 |
maturation of 5S rRNA |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
SGD:S000003508 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000481 |
maturation of 5S rRNA |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000398 |
mRNA splicing, via spliceosome |
ECO:0000353 |
physical interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000398 |
mRNA splicing, via spliceosome |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000398 |
mRNA splicing, via spliceosome |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0046540 |
U4/U6 x U5 tri-snRNP complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000365724 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0045292 |
mRNA cis splicing, via spliceosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000365724 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000481 |
maturation of 5S rRNA |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000365724 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000398 |
mRNA splicing, via spliceosome |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005681 |
spliceosomal complex |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Wilkinson, CR et al. (2004) Ubiquitin-like protein Hub1 is required for pre-mRNA splicing and localization of an essential splicing factor in fission yeast. Curr. Biol. 14 2283-8 PubMed GONUTS page
- ↑ 2.0 2.1 Stevens, SW & Abelson, J (1999) Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins. Proc. Natl. Acad. Sci. U.S.A. 96 7226-31 PubMed GONUTS page
- ↑ 3.0 3.1 Gottschalk, A et al. (1999) Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP. EMBO J. 18 4535-48 PubMed GONUTS page
- ↑ 4.0 4.1 Li, Z et al. (2009) Rational extension of the ribosome biogenesis pathway using network-guided genetics. PLoS Biol. 7 e1000213 PubMed GONUTS page
- ↑ Stevens, SW et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7 1543-53 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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