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CACAO
the intercollegiate annotation competition!
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| The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions.
If you are interested in participating, please email us - Brenley or Jim.
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CACAO Fall 2013
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- Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
- For more help on evidence codes
Lecture slides
Evidence codes you are permitted to choose from
- Here's a list of the evidence codes that CACAO students may use:
- IDA: Inferred from Direct Assay
- IMP: Inferred from Mutant Phenotype
- IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
- ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
- ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
- ISM: Inferred from Sequence Model - requires with/from field to be filled in
- IGC: Inferred from Genomic Context
Virus-related GO terms
- For those of you interested in annotating proteins from viruses and phages:
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Calendar of Rounds
| Inning/Round |
Period |
Start - End Dates (CST) |
Schools |
Notes
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0
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Practice
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Aug 27, 6:00pm - Sept 8, 5:59pm
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1
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Annotation
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Sept 8, 6:00pm – Sept 15, 5:59pm
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Texas A&M
University of Wisconsin-Madison
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1
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Challenge
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Sept 15, 6:00pm – Sept 22, 5:59pm
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2
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Annotation
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Sept 22, 6:00pm – Sept 29, 5:59pm
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2
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Challenge
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Sept 29, 6:00pm – Oct 6, 5:59pm
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3
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Annotation
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Oct 6, 6:00pm – Oct 13, 5:59pm
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3
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Challenge
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Oct 13, 6:00pm – Oct 20, 5:59pm
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4
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Annotation
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Oct 20, 6:00pm – Oct 27, 5:59pm
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4
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Challenge
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Oct 27, 6:00pm – Nov 3, 5:59pm
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5
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Annotation
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Nov 3, 6:00pm - Nov 10, 5:59pm
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5
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Challenge
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Nov 10, 6:00pm - Nov 17, 5:59pm
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Participating Schools
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Subcategories
This category has the following 24 subcategories, out of 24 total.
Pages in category "CACAO Fall 2013"
The following 6 pages are in this category, out of 6 total.
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