It is now the 2nd CHALLENGE Period for CACAO Spring 2018! It will end on Monday February 26, 2018 at 05:59 pm CST
This is your chance to challenge other team's annotations. You may also DEFEND or suggest improvements to your own annotations IF they have been challenged. Please note, although we ENCOURAGE challenges, an excess of identical challenges that do not appear to be applicable to the annotation or well thought out will be considered spam and ignored.

Have any questions? Please email us at ecoliwiki@gmail.com

Category:CACAO Fall 2013

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CACAO
the intercollegiate annotation competition!
The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions. If you are interested in participating, please email us - Brenley or Jim.
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CACAO Fall 2013

  • Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
  • For more help on evidence codes

Lecture slides

Evidence codes you are permitted to choose from

  • Here's a list of the evidence codes that CACAO students may use:
  1. IDA: Inferred from Direct Assay
  2. IMP: Inferred from Mutant Phenotype
  3. IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
  4. ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
  5. ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
  6. ISM: Inferred from Sequence Model - requires with/from field to be filled in
  7. IGC: Inferred from Genomic Context

Virus-related GO terms

  • For those of you interested in annotating proteins from viruses and phages:

Scoreboard

Calendar of Rounds

Inning/Round Period Start - End Dates (CST) Schools Notes

0

Practice

Aug 27, 6:00pm - Sept 8, 5:59pm

1

Annotation

Sept 8, 6:00pm – Sept 15, 5:59pm

Texas A&M

University of Wisconsin-Madison

1

Challenge

Sept 15, 6:00pm – Sept 22, 5:59pm

2

Annotation

Sept 22, 6:00pm – Sept 29, 5:59pm

2

Challenge

Sept 29, 6:00pm – Oct 6, 5:59pm

3

Annotation

Oct 6, 6:00pm – Oct 13, 5:59pm

3

Challenge

Oct 13, 6:00pm – Oct 20, 5:59pm

4

Annotation

Oct 20, 6:00pm – Oct 27, 5:59pm

4

Challenge

Oct 27, 6:00pm – Nov 3, 5:59pm

5

Annotation

Nov 3, 6:00pm - Nov 10, 5:59pm

5

Challenge

Nov 10, 6:00pm - Nov 17, 5:59pm


Participating Schools

Subcategories

This category has the following 24 subcategories, out of 24 total.

Pages in category "CACAO Fall 2013"

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