updatedbyinstructor | MOUSE:NF2L2 | Nfarmer91, Team Bonfire | 2013-03-30 00:50:12 CDT | GO:1902037 negative regulation of hematopoietic stem cell differentiation (P) | PMID:23434824 | ECO:0000315 mutant phenotype evidence used in manual assertion | Figure 2: Moreover, we found a significantly increased level of Ki-67 expression on LSKs from Nrf2−/− when compared with WT bone marrow in vivo (Fig. 2c), in concordance with the enhanced proliferation observed in vitro.
| challenge |
acceptable | MOUSE:PARD3 | Nfarmer91, Team Bonfire | 2013-03-30 00:40:23 CDT | GO:0002092 positive regulation of receptor internalization (P) | PMID:23354168 | ECO:0000315 mutant phenotype evidence used in manual assertion | Figure 4: While Alexa dye-coupled VEGF-A and VEGF-C were readily taken up by cultured mouse control endothelial cells, knockdown of Pard3 or Dab2 significantly decreased the perinuclear accumulation of VEGF-A and VEGF-C (Fig. 4a–c). Surface biotinylation experiments further confirmed that VEGF-C-induced internalization of VEGFR3 and VEGFR2 was impaired in Dab2 knockdown or Pard3 knockdown cells (Fig. 4d,e).
| challenge |
acceptable | MOUSE:DAB2 | Nfarmer91, Team Bonfire | 2013-03-30 00:38:19 CDT | GO:0002092 positive regulation of receptor internalization (P) | PMID:23354168 | ECO:0000315 mutant phenotype evidence used in manual assertion | Figure 4: While Alexa dye-coupled VEGF-A and VEGF-C were readily taken up by cultured mouse control endothelial cells, knockdown of Pard3 or Dab2 significantly decreased the perinuclear accumulation of VEGF-A and VEGF-C (Fig. 4a–c). Surface biotinylation experiments further confirmed that VEGF-C-induced internalization of VEGFR3 and VEGFR2 was impaired in Dab2 knockdown or Pard3 knockdown cells (Fig. 4d,e).
| challenge |
acceptable | MOUSE:TRIB1 | Nfarmer91, Team Bonfire | 2013-03-30 00:19:09 CDT | GO:0045651 positive regulation of macrophage differentiation (P) | PMID:23515163 | ECO:0000315 mutant phenotype evidence used in manual assertion | Figure 2: Although the proportions of B cells, T cells, dendritic cells and Ly6ChighMac1+ inflammatory monocytes were not altered between wild-type and Trib1−/− splenocytes, F4/80+Mac1+ macrophages, which also expressed Mrc1 (also called MR), Arg1 and Fizz1 (also called Retnla), were markedly reduced and Siglec-F+CCR3+ eosinophils were absent in Trib1−/− spleens (Fig. 1a and Supplementary Figs 1 and 2).
| challenge |
acceptable | MOUSE:TRIB1 | Nfarmer91, Team Bonfire | 2013-03-30 00:19:09 CDT | GO:0045645 positive regulation of eosinophil differentiation (P) | PMID:23515163 | ECO:0000315 mutant phenotype evidence used in manual assertion | Figure 2: Although the proportions of B cells, T cells, dendritic cells and Ly6ChighMac1+ inflammatory monocytes were not altered between wild-type and Trib1−/− splenocytes, F4/80+Mac1+ macrophages, which also expressed Mrc1 (also called MR), Arg1 and Fizz1 (also called Retnla), were markedly reduced and Siglec-F+CCR3+ eosinophils were absent in Trib1−/− spleens (Fig. 1a and Supplementary Figs 1 and 2).
| challenge |
acceptable | MOUSE:TRIB1 | Nfarmer91, Team Bonfire | 2013-03-30 00:19:09 CDT | GO:0045659 negative regulation of neutrophil differentiation (P) | PMID:23515163 | ECO:0000315 mutant phenotype evidence used in manual assertion | Figure 2: Although the proportions of B cells, T cells, dendritic cells and Ly6ChighMac1+ inflammatory monocytes were not altered between wild-type and Trib1−/− splenocytes, F4/80+Mac1+ macrophages, which also expressed Mrc1 (also called MR), Arg1 and Fizz1 (also called Retnla), were markedly reduced and Siglec-F+CCR3+ eosinophils were absent in Trib1−/− spleens (Fig. 1a and Supplementary Figs 1 and 2). In contrast, the neutrophil population was increased in Trib1−/− spleens (Fig. 1a and Supplementary Fig. 3).
| challenge |
acceptable | MOUSE:RING2 | Nfarmer91, Team Bonfire | 2013-03-16 13:25:56 CDT | GO:0007281 germ cell development (P) | PMID:23486062 | ECO:0000315 mutant phenotype evidence used in manual assertion | In figure 1 Rnf2 is shown to regulate primordial germ cell development, as seen through the effects of Rnf2 mutants
| challenge |
acceptable | HUMAN:DPP4 | Nfarmer91, Team Bonfire | 2013-03-16 13:25:38 CDT | GO:0001618 viral receptor activity (F) | PMID:23486063 | ECO:0000314 direct assay evidence used in manual assertion | Figure 2 shows human coronavirus-Erasmus Medical Center (hCoV-EMC) tail spike binding to DPP4 which is the event needed for viral infection, Figure 3 shows DPP4 is present on hCoV-EMC succeptible cells and figure 4 confirms DDP4 is essential for the virus infection.
| challenge |
updatedbyinstructor | MOUSE:CAHM1 | Nfarmer91, Team Bonfire | 2013-03-16 12:23:14 CDT | GO:0005245 voltage-gated calcium channel activity (F) | PMID:22711817 | ECO:0000314 direct assay evidence used in manual assertion | Figures 1 and 4 in this publication shwo that CALHM1 is involved in voltage-dependent gating and that the channel works with calcium.
| challenge |
updatedbyinstructor | MOUSE:CAHM1 | Nfarmer91, Team Bonfire | 2013-03-16 12:15:04 CDT | GO:0050909 sensory perception of taste (P) | PMID:23467090 | ECO:0000315 mutant phenotype evidence used in manual assertion | Through work with CALHM1 knockout mutants,it was shown (FIG. 4) that CALHM1 is involved in the taste-evoked ATP release from taste cells.
| challenge |
acceptable | HUMAN:GDF8 | Lallison2012, Team Bonfire | 2013-02-10 12:36:27 CST | GO:0051898 negative regulation of protein kinase B signaling cascade (P) | PMID:19357233 | ECO:0000314 direct assay evidence used in manual assertion | Fig. 3; Fig 4; demonstrate that mysostatin inhibits the activation of the Akt signaling pathway in differentiating HuSkMC
| challenge |
acceptable | BOVIN:GDF8 | Lallison2012, Team Bonfire | 2013-02-10 12:29:37 CST | GO:0048147 negative regulation of fibroblast proliferation (P) | PMID:23268959 | ECO:0000314 direct assay evidence used in manual assertion | Figure 1; Indicates a significant inhibition of fibroblast [NIH3T3,
mouse] cell proliferation by myostatin [recombinant, bovine] compared
to control.
Myostatin fibroblast inhibition directly stated in: Results
Section/1st paragraph/last sentence.
| challenge |
updatedbyinstructor | CAEEL:TMC1 | Nfarmer91, Team Bonfire | 2013-02-09 14:56:37 CST | GO:0005272 sodium channel activity (F) | PMID:23364694 | ECO:0000315 mutant phenotype evidence used in manual assertion | Figure 4 shows sodium-sensitive cation currents in TMC-1 expressing cells indicating its role as a sodium channel. In supplementary figure 8 the authors also confirm TMC-1's localization to the plasma membrane using fluorescence imaging, further supporting the finding of its role as a sodium channel complex.
| challenge |
updatedbyinstructor | MOUSE:DRD2 | Nfarmer91, Team Bonfire | 2013-02-09 14:08:04 CST | GO:0045824 negative regulation of innate immune response (P) | PMID:23242137 | ECO:0000315 mutant phenotype evidence used in manual assertion | Figure 2 in this publication displays data that the authors found to indicate that Drd2 knockout mice were hyper-responsive with higher neuroinflammation
| challenge |
acceptable | MOUSE:GDF8 | Lallison2012, Team Bonfire | 2013-02-04 10:05:06 CST | GO:0046627 negative regulation of insulin receptor signaling pathway (P) | PMID:16182246 | ECO:0000315 mutant phenotype evidence used in manual assertion | Responses of insulin action.. Section; Fig 3; muscle protein kinase Akt intermediate phosphorylation was measured due to is role in the insulin signaling pathway, transgenic mice showed greater levels [inhibition of myostatin] of phosphorylation
| challenge |
updatedbyinstructor | MOUSE:GDF8 | Lallison2012, Team Bonfire | 2013-02-04 05:50:25 CST | GO:0033673 negative regulation of kinase activity (P) | PMID:19357233 | ECO:0000315 mutant phenotype evidence used in manual assertion | Results section/ Increased muscle weight and CK activity... Section; Fig. 7 B; Show Creatine Kinase activity increased by myostatin expression inhitbion in vivo [mice], activity bio marker used. Mice had Severe Combined Immunodeficiency and no MSTN mutations
| challenge |
acceptable | HUMAN:GDF8 | Lallison2012, Team Bonfire | 2013-02-04 05:05:28 CST | GO:0046716 muscle cell homeostasis (P) | PMID:19357233 | ECO:0000314 direct assay evidence used in manual assertion | Results section/ Myostatin reduces diameters...section/last sentence; Fig. 5c; states myostatin inhibits genes required for muscle maintenance [homeostatsis of muscle] instead of alternative atrophy pathway
| challenge |
updatedbyinstructor | HUMAN:GDF8 | Lallison2012, Team Bonfire | 2013-02-04 04:32:55 CST | GO:0045662 negative regulation of myoblast differentiation (P) | PMID:19357233 | ECO:0000314 direct assay evidence used in manual assertion | | challenge |