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Category:Team Bonfire

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StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
updatedbyinstructorMOUSE:NF2L2Nfarmer91, Team Bonfire2013-03-30 00:50:12 CDTGO:1902037 negative regulation of hematopoietic stem cell differentiation (P)PMID:23434824ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2: Moreover, we found a significantly increased level of Ki-67 expression on LSKs from Nrf2−/− when compared with WT bone marrow in vivo (Fig. 2c), in concordance with the enhanced proliferation observed in vitro.

challenge
acceptableMOUSE:PARD3Nfarmer91, Team Bonfire2013-03-30 00:40:23 CDTGO:0002092 positive regulation of receptor internalization (P)PMID:23354168ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4: While Alexa dye-coupled VEGF-A and VEGF-C were readily taken up by cultured mouse control endothelial cells, knockdown of Pard3 or Dab2 significantly decreased the perinuclear accumulation of VEGF-A and VEGF-C (Fig. 4a–c). Surface biotinylation experiments further confirmed that VEGF-C-induced internalization of VEGFR3 and VEGFR2 was impaired in Dab2 knockdown or Pard3 knockdown cells (Fig. 4d,e).

challenge
acceptableMOUSE:DAB2Nfarmer91, Team Bonfire2013-03-30 00:38:19 CDTGO:0002092 positive regulation of receptor internalization (P)PMID:23354168ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4: While Alexa dye-coupled VEGF-A and VEGF-C were readily taken up by cultured mouse control endothelial cells, knockdown of Pard3 or Dab2 significantly decreased the perinuclear accumulation of VEGF-A and VEGF-C (Fig. 4a–c). Surface biotinylation experiments further confirmed that VEGF-C-induced internalization of VEGFR3 and VEGFR2 was impaired in Dab2 knockdown or Pard3 knockdown cells (Fig. 4d,e).

challenge
acceptableMOUSE:TRIB1Nfarmer91, Team Bonfire2013-03-30 00:19:09 CDTGO:0045651 positive regulation of macrophage differentiation (P)PMID:23515163ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2: Although the proportions of B cells, T cells, dendritic cells and Ly6ChighMac1+ inflammatory monocytes were not altered between wild-type and Trib1−/− splenocytes, F4/80+Mac1+ macrophages, which also expressed Mrc1 (also called MR), Arg1 and Fizz1 (also called Retnla), were markedly reduced and Siglec-F+CCR3+ eosinophils were absent in Trib1−/− spleens (Fig. 1a and Supplementary Figs 1 and 2).

challenge
acceptableMOUSE:TRIB1Nfarmer91, Team Bonfire2013-03-30 00:19:09 CDTGO:0045645 positive regulation of eosinophil differentiation (P)PMID:23515163ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2: Although the proportions of B cells, T cells, dendritic cells and Ly6ChighMac1+ inflammatory monocytes were not altered between wild-type and Trib1−/− splenocytes, F4/80+Mac1+ macrophages, which also expressed Mrc1 (also called MR), Arg1 and Fizz1 (also called Retnla), were markedly reduced and Siglec-F+CCR3+ eosinophils were absent in Trib1−/− spleens (Fig. 1a and Supplementary Figs 1 and 2).

challenge
acceptableMOUSE:TRIB1Nfarmer91, Team Bonfire2013-03-30 00:19:09 CDTGO:0045659 negative regulation of neutrophil differentiation (P)PMID:23515163ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2: Although the proportions of B cells, T cells, dendritic cells and Ly6ChighMac1+ inflammatory monocytes were not altered between wild-type and Trib1−/− splenocytes, F4/80+Mac1+ macrophages, which also expressed Mrc1 (also called MR), Arg1 and Fizz1 (also called Retnla), were markedly reduced and Siglec-F+CCR3+ eosinophils were absent in Trib1−/− spleens (Fig. 1a and Supplementary Figs 1 and 2). In contrast, the neutrophil population was increased in Trib1−/− spleens (Fig. 1a and Supplementary Fig. 3).

challenge
acceptableMOUSE:RING2Nfarmer91, Team Bonfire2013-03-16 13:25:56 CDTGO:0007281 germ cell development (P)PMID:23486062ECO:0000315 mutant phenotype evidence used in manual assertion

In figure 1 Rnf2 is shown to regulate primordial germ cell development, as seen through the effects of Rnf2 mutants

challenge
acceptableHUMAN:DPP4Nfarmer91, Team Bonfire2013-03-16 13:25:38 CDTGO:0001618 viral receptor activity (F)PMID:23486063ECO:0000314 direct assay evidence used in manual assertion

Figure 2 shows human coronavirus-Erasmus Medical Center (hCoV-EMC) tail spike binding to DPP4 which is the event needed for viral infection, Figure 3 shows DPP4 is present on hCoV-EMC succeptible cells and figure 4 confirms DDP4 is essential for the virus infection.

challenge
updatedbyinstructorMOUSE:CAHM1Nfarmer91, Team Bonfire2013-03-16 12:23:14 CDTGO:0005245 voltage-gated calcium channel activity (F)PMID:22711817ECO:0000314 direct assay evidence used in manual assertion

Figures 1 and 4 in this publication shwo that CALHM1 is involved in voltage-dependent gating and that the channel works with calcium.

challenge
updatedbyinstructorMOUSE:CAHM1Nfarmer91, Team Bonfire2013-03-16 12:15:04 CDTGO:0050909 sensory perception of taste (P)PMID:23467090ECO:0000315 mutant phenotype evidence used in manual assertion

Through work with CALHM1 knockout mutants,it was shown (FIG. 4) that CALHM1 is involved in the taste-evoked ATP release from taste cells.

challenge
acceptableHUMAN:GDF8Lallison2012, Team Bonfire2013-02-10 12:36:27 CSTGO:0051898 negative regulation of protein kinase B signaling cascade (P)PMID:19357233ECO:0000314 direct assay evidence used in manual assertion

Fig. 3; Fig 4; demonstrate that mysostatin inhibits the activation of the Akt signaling pathway in differentiating HuSkMC

challenge
acceptableBOVIN:GDF8Lallison2012, Team Bonfire2013-02-10 12:29:37 CSTGO:0048147 negative regulation of fibroblast proliferation (P)PMID:23268959ECO:0000314 direct assay evidence used in manual assertion

Figure 1; Indicates a significant inhibition of fibroblast [NIH3T3,

mouse] cell proliferation by myostatin [recombinant, bovine] compared to control.

Myostatin fibroblast inhibition directly stated in: Results

Section/1st paragraph/last sentence.

challenge
updatedbyinstructorCAEEL:TMC1Nfarmer91, Team Bonfire2013-02-09 14:56:37 CSTGO:0005272 sodium channel activity (F)PMID:23364694ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 shows sodium-sensitive cation currents in TMC-1 expressing cells indicating its role as a sodium channel. In supplementary figure 8 the authors also confirm TMC-1's localization to the plasma membrane using fluorescence imaging, further supporting the finding of its role as a sodium channel complex.

challenge
updatedbyinstructorMOUSE:DRD2Nfarmer91, Team Bonfire2013-02-09 14:08:04 CSTGO:0045824 negative regulation of innate immune response (P)PMID:23242137ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2 in this publication displays data that the authors found to indicate that Drd2 knockout mice were hyper-responsive with higher neuroinflammation

challenge
acceptableMOUSE:GDF8Lallison2012, Team Bonfire2013-02-04 10:05:06 CSTGO:0046627 negative regulation of insulin receptor signaling pathway (P)PMID:16182246ECO:0000315 mutant phenotype evidence used in manual assertion

Responses of insulin action.. Section; Fig 3; muscle protein kinase Akt intermediate phosphorylation was measured due to is role in the insulin signaling pathway, transgenic mice showed greater levels [inhibition of myostatin] of phosphorylation

challenge
updatedbyinstructorMOUSE:GDF8Lallison2012, Team Bonfire2013-02-04 05:50:25 CSTGO:0033673 negative regulation of kinase activity (P)PMID:19357233ECO:0000315 mutant phenotype evidence used in manual assertion

Results section/ Increased muscle weight and CK activity... Section; Fig. 7 B; Show Creatine Kinase activity increased by myostatin expression inhitbion in vivo [mice], activity bio marker used. Mice had Severe Combined Immunodeficiency and no MSTN mutations

challenge
acceptableHUMAN:GDF8Lallison2012, Team Bonfire2013-02-04 05:05:28 CSTGO:0046716 muscle cell homeostasis (P)PMID:19357233ECO:0000314 direct assay evidence used in manual assertion

Results section/ Myostatin reduces diameters...section/last sentence; Fig. 5c; states myostatin inhibits genes required for muscle maintenance [homeostatsis of muscle] instead of alternative atrophy pathway

challenge
updatedbyinstructorHUMAN:GDF8Lallison2012, Team Bonfire2013-02-04 04:32:55 CSTGO:0045662 negative regulation of myoblast differentiation (P)PMID:19357233ECO:0000314 direct assay evidence used in manual assertion

Fig. 1 & 4A

challenge

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Pages in category "Team Bonfire"

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