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Category:Team T7

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StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
updatedbyinstructorBPT4:BP06JamesMcDermott, Team T72016-06-08 11:03:55 CDTGO:0098025 virus tail, baseplate (C)PMID:2403438ECO:0000314 direct assay evidence used in manual assertion

TABLE 3. Molecular weights and copy numbers of baseplate constituents

challenge
unacceptableBPT4:VR2AJamesMcDermott, Team T72016-06-08 10:40:35 CDTGO:0020002 host cell plasma membrane (C)PMID:2379817ECO:0000315 mutant phenotype evidence used in manual assertion

Authors use missense mutations and sequence rIIA gene of bacteriophage T4.

challenge
unacceptableBPT4:FIB37JamesMcDermott, Team T72016-06-07 12:42:19 CDTGO:0098024 virus tail, fiber (C)PMID:7338921ECO:0000314 direct assay evidence used in manual assertion

Authors sequence tail fiber genes in assay of T4.

challenge
unacceptableBPT4:A0A023ZW86JamesMcDermott, Team T72016-06-07 12:08:03 CDTGO:0016021 integral component of membrane (C)PMID:26081634ECO:0000314 direct assay evidence used in manual assertion

Authors align full genome with NCBI T4 genome and this protein is identified. Authors deposit new genome in Genbank.

challenge
updatedbyinstructorBPT4:ALCBenjaminJones, Team T72016-05-06 16:40:46 CDTGO:0039653 suppression by virus of host transcription (P)PMID:2185231ECO:0000315 mutant phenotype evidence used in manual assertion

Table 2

challenge
updatedbyinstructorBPT4:PINBenjaminJones, Team T72016-05-06 16:37:09 CDTGO:0030414 peptidase inhibitor activity (F)PMID:2838455ECO:0000314 direct assay evidence used in manual assertion

Fig 7

challenge
updatedbyinstructorBPT4:TEV1BenjaminJones, Team T72016-05-06 16:16:31 CDTGO:1990238 double-stranded DNA endodeoxyribonuclease activity (F)PMID:2543665ECO:0000314 direct assay evidence used in manual assertion

Fig 3

challenge
updatedbyinstructorBPT4:MODABenjaminJones, Team T72016-05-06 16:15:41 CDTGO:1990404 NAD+-protein ADP-ribosyltransferase activity (F)PMID:15489438ECO:0000314 direct assay evidence used in manual assertion

Fig 2 "Self-ADP-ribosylation of ModA and ModB was also observed in the reactions"

challenge
updatedbyinstructorBPT4:ALTBenjaminJones, Team T72016-05-06 16:12:54 CDTGO:0106274 NAD+-protein-arginine ADP-ribosyltransferase activity (F)PMID:173540ECO:0000314 direct assay evidence used in manual assertion

Figs 7,8,9.

challenge
acceptableBPT5:FIBL1TaylorBourgeois, Team T72016-05-05 17:05:12 CDTGO:0039638 lipopolysaccharide-mediated virion attachment to host cell (P)PMID:7045389ECO:0000315 mutant phenotype evidence used in manual assertion

As shown in Figure 1, the L-shaped tail fibers in T5 increase the absorption rate by reversibly binding to LPS on the host. The figure shows mutant hosts with more available O-antigens increase the absorption rate of T5 phage into the host.

challenge
updatedbyinstructorBPT5:EXO5TaylorBourgeois, Team T72016-05-02 23:18:55 CDTGO:0035312 5'-3' exodeoxyribonuclease activity (F)PMID:9874768ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3

challenge
updatedbyinstructorBPT5:CAPSDTaylorBourgeois, Team T72016-04-26 23:35:25 CDTGO:0019028 viral capsid (C)PMID:24198424ECO:0000314 direct assay evidence used in manual assertion

Fig 1

challenge
unacceptableBPT5:HEL10TaylorBourgeois, Team T72016-04-26 23:08:28 CDTGO:0004386 helicase activity (F)PMID:2547651ECO:0000247 sequence alignment evidence used in manual assertion

Shown in Figure 1, alignment of the T5 gene that codes for helicase with conserved segments of the helicase superfamily showed a sufficient alignment score and definitive evidence that this T5 protein is a helicase

challenge
updatedbyinstructorBPT5:DNMKTaylorBourgeois, Team T72016-04-26 19:02:48 CDTGO:0046939 nucleotide phosphorylation (P)PMID:14711503ECO:0000314 direct assay evidence used in manual assertion

"Table 2. Purification of the recombinant bacteriophage T5 dNMP kinase"..."these bacteriophages encode a deoxyribonucleoside monophosphate kinase (EC 2.7.4.12) catalyzing phosphorylation of 3 out of the 4 deoxyribonucleoside monophosphates included in its DNA–dTMP, dGMP,1 and hm-dCMP."

An enzyme assay determined one unit of deoxyribonucleotide kinase activity to be defined as catalyzing of the phosphorylation of 1 umol of 1 dNMP per minute

challenge
unacceptableBPT5:A1TaylorBourgeois, Team T72016-04-26 12:27:07 CDTGO:0039657 suppression by virus of host gene expression (P)PMID:7033565ECO:0000315 mutant phenotype evidence used in manual assertion

A mutation in A1 was found to prevent supression of pre-early gene transcription and is likely involved in the shut off of pre-early gene expression by some type of interaction with host RNA polymerase

challenge
updatedbyinstructorBPT4:PRIMJamesMcDermott, Team T72016-04-24 21:56:29 CDTGO:0039693 viral DNA genome replication (P)PMID:2422175ECO:0000314 direct assay evidence used in manual assertion

Authors add and remove T4 replication proteins to prove the function of DNA primase. FIG. 6. The 61 protein alone can produce primers for initiating DNA synthesis.

challenge
unacceptableBPT4:BP25JamesMcDermott, Team T72016-04-24 21:48:13 CDTGO:0098025 virus tail, baseplate (C)PMID:3186452ECO:0000314 direct assay evidence used in manual assertion

Baseplate wedge protein gp25 cloned in vector and isolated by authors.

challenge
unacceptableBPT4:GLRXJamesMcDermott, Team T72016-04-24 21:16:49 CDTGO:0015035 protein disulfide oxidoreductase activity (F)PMID:3735493ECO:0000314 direct assay evidence used in manual assertion

Gene subcloned and expressed in lambda vector.

challenge
updatedbyinstructorBPT4:DMAJamesMcDermott, Team T72016-04-24 19:50:44 CDTGO:0009008 DNA-methyltransferase activity (F)PMID:7782299ECO:0000314 direct assay evidence used in manual assertion

Bacteriophage T4 dam gene expressed in plasmid by direct assay by authors. Fig 6

challenge
unacceptableBPT4:DMDJamesMcDermott, Team T72016-04-21 19:35:25 CDTGO:0048524 positive regulation of viral process (P)PMID:22403819ECO:0000315 mutant phenotype evidence used in manual assertion

Authors show experimentally that by using a T4 dmd mutant that the dmd protein is serving as an anti-toxin for the T4 bacteriophage.

challenge

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Pages in category "Team T7"

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