User:TaylorBourgeois

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
unacceptable	BPT5:A1	2016-04-26 12:27:07 CDT	GO:0039657 suppression by virus of host gene expression (P)	PMID:7033565	ECO:0000315 mutant phenotype evidence used in manual assertion	A mutation in A1 was found to prevent supression of pre-early gene transcription and is likely involved in the shut off of pre-early gene expression by some type of interaction with host RNA polymerase	challenge
updatedbyinstructor	BPT5:DNMK	2016-04-26 19:02:48 CDT	GO:0046939 nucleotide phosphorylation (P)	PMID:14711503	ECO:0000314 direct assay evidence used in manual assertion	"Table 2. Purification of the recombinant bacteriophage T5 dNMP kinase"..."these bacteriophages encode a deoxyribonucleoside monophosphate kinase (EC 2.7.4.12) catalyzing phosphorylation of 3 out of the 4 deoxyribonucleoside monophosphates included in its DNA–dTMP, dGMP,1 and hm-dCMP." An enzyme assay determined one unit of deoxyribonucleotide kinase activity to be defined as catalyzing of the phosphorylation of 1 umol of 1 dNMP per minute	challenge
unacceptable	BPT5:HEL10	2016-04-26 23:08:28 CDT	GO:0004386 helicase activity (F)	PMID:2547651	ECO:0000247 sequence alignment evidence used in manual assertion	Shown in Figure 1, alignment of the T5 gene that codes for helicase with conserved segments of the helicase superfamily showed a sufficient alignment score and definitive evidence that this T5 protein is a helicase	challenge
updatedbyinstructor	BPT5:CAPSD	2016-04-26 23:35:25 CDT	GO:0019028 viral capsid (C)	PMID:24198424	ECO:0000314 direct assay evidence used in manual assertion	Fig 1	challenge
updatedbyinstructor	BPT5:EXO5	2016-05-02 23:18:55 CDT	GO:0035312 5'-3' exodeoxyribonuclease activity (F)	PMID:9874768	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 3	challenge
acceptable	BPT5:FIBL1	2016-05-05 17:05:12 CDT	GO:0039638 lipopolysaccharide-mediated virion attachment to host cell (P)	PMID:7045389	ECO:0000315 mutant phenotype evidence used in manual assertion	As shown in Figure 1, the L-shaped tail fibers in T5 increase the absorption rate by reversibly binding to LPS on the host. The figure shows mutant hosts with more available O-antigens increase the absorption rate of T5 phage into the host.	challenge

acceptable:1
unacceptable:2
requires_changes:0
flagged:0

Annotations challenged by TaylorBourgeois

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by TaylorBourgeois

What do the icons mean in the status column?