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Category:Phage Hunters Spring 2016

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cacao.jpg
CACAO
the intercollegiate annotation competition!
The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions. If you are interested in participating, please email us - ecoliwiki@gmail.com.
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Phage Hunters Spring 2016

Quick Links

  • Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
  • For more help on evidence codes
Look through the helpful handouts for students, this includes printable documents

Participating schools

  • University of Maryland, Baltimore County
  • University of Mary Washington
  • Albion College
  • Doane College
  • Texas A&M University
  • James Madison University
  • Virginia Commonwealth University

Lecture slides

Background info is at the About CACAO page. Links to new material will be posted here.

See

Evidence codes you are permitted to choose from

  • Here's a list of the evidence codes that CACAO students may use:
  1. IDA: Inferred from Direct Assay
  2. IMP: Inferred from Mutant Phenotype
  3. IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
  4. ISS: Inferred from Sequence or Structural Similarity - almost always requires with/from field to be filled in
  5. ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
  6. ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
  7. ISM: Inferred from Sequence Model - requires with/from field to be filled in
  8. IGC: Inferred from Genomic Context

ALL other codes, even if used correctly, will cause the annotation to be rejected by the judges

Virus-related GO terms

  • For those of you interested in annotating proteins from viruses and phages:

Scoreboard

Calendar of Rounds

Inning Activity Start End Notes

instruction

  • 2016-02-29
  • 06:00 PM
  • 2016-03-07
  • 05:59 PM

Please watch the online videos as well (available here)

1

annotation

  • 2016-03-07
  • 06:00 PM
  • 2016-03-14
  • 05:59 PM

1

challenge

  • 2016-03-14
  • 06:00 PM
  • 2016-03-21
  • 05:59 PM

2

annotation

  • 2016-03-21
  • 06:00 PM
  • 2016-03-28
  • 05:59 PM

2

challenge

  • 2016-03-28
  • 06:00 PM
  • 2016-04-04
  • 05:59 PM

3

annotation

  • 2016-04-04
  • 06:00 PM
  • 2016-04-11
  • 05:59 PM

3

challenge

  • 2016-04-11
  • 06:00 PM
  • 2016-04-18
  • 05:59 PM

Last round for UMBC

4

annotation

  • 2016-04-18
  • 06:00 PM
  • 2016-04-25
  • 05:59 PM

4

open

  • 2016-04-25
  • 06:00 PM
  • 2016-08-01
  • 11:59 PM

This is an extended open round, please ask your instructors for final deadlines for your individual class/section.

Annotations and challenges can both be made this inning.

References

See Help:References for how to manage references in GONUTS.

  1. Serrano-Heras, G et al. (2007) Protein p56 from the Bacillus subtilis phage phi29 inhibits DNA-binding ability of uracil-DNA glycosylase. Nucleic Acids Res. 35 5393-401 PubMed GONUTS page

Subcategories

This category has the following 30 subcategories, out of 30 total.