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CACAO
the intercollegiate annotation competition!
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| The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions.
If you are interested in participating, please email us - ecoliwiki@gmail.com.
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Phage Hunters Spring 2016
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Quick Links
- Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
- For more help on evidence codes
- → Look through the helpful handouts for students, this includes printable documents
Participating schools
- University of Maryland, Baltimore County
- University of Mary Washington
- Albion College
- Doane College
- Texas A&M University
- James Madison University
- Virginia Commonwealth University
Lecture slides
Background info is at the About CACAO page. Links to new material will be posted here.
See
Evidence codes you are permitted to choose from
- Here's a list of the evidence codes that CACAO students may use:
- IDA: Inferred from Direct Assay
- IMP: Inferred from Mutant Phenotype
- IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
- ISS: Inferred from Sequence or Structural Similarity - almost always requires with/from field to be filled in
- ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
- ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
- ISM: Inferred from Sequence Model - requires with/from field to be filled in
- IGC: Inferred from Genomic Context
ALL other codes, even if used correctly, will cause the annotation to be rejected by the judges
Virus-related GO terms
- For those of you interested in annotating proteins from viruses and phages:
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Calendar of Rounds
| Inning |
Activity |
Start |
End |
Notes
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instruction
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Please watch the online videos as well (available here)
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1
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annotation
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1
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challenge
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2
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annotation
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2
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challenge
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3
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annotation
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3
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challenge
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Last round for UMBC
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4
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annotation
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4
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open
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This is an extended open round, please ask your instructors for final deadlines for your individual class/section.
Annotations and challenges can both be made this inning.
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References
See Help:References for how to manage references in GONUTS.
- ↑ Serrano-Heras, G et al. (2007) Protein p56 from the Bacillus subtilis phage phi29 inhibits DNA-binding ability of uracil-DNA glycosylase. Nucleic Acids Res. 35 5393-401 PubMed GONUTS page
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Subcategories
This category has the following 30 subcategories, out of 30 total.
