GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

Category:Team Skinny Genes

From GONUTS
Jump to: navigation, search
StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableSHIFL:MXICAvf5209, Team Skinny Genes2015-11-18 14:49:15 CSTGO:0050709 negative regulation of protein secretion (P)PMID:19017268ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1

challenge
acceptableECOLI:LGTAvf5209, Team Skinny Genes2015-11-18 11:45:25 CSTGO:0008961 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity (F)PMID:7896715ECO:0000315 mutant phenotype evidence used in manual assertion

These results (Fig. 1 and Table 1) show that E. coli umpA mutants (strains SK634, SK635, and SK636) were defective in diacylglyceryl modification of prolipoprotein because of defective diacylglyceryl transferase. Defective modification of prolipoprotein in umpA mutants was confirmed by in vitro analysis of prolipoprotein modification activity.

challenge
unacceptableECOLI:DPO3AAvf5209, Team Skinny Genes2015-11-18 09:28:08 CSTGO:0003887 DNA-directed DNA polymerase activity (F)PMID:16164549ECO:0000315 mutant phenotype evidence used in manual assertion

in Table 3 are the mutant DNA strains (dnaE486 and dnaE511) against the wildtype to show that the increasing mutations are caused by defects in the DNA polymerase III alpha subunit that are encoded by dnaE. The mutations of the dnaE prove to be responsible/involved in DNA polymerase activity.

challenge
unacceptableECOLX:TRAJ2Avf5209, Team Skinny Genes2015-11-17 16:32:35 CSTGO:0000746 conjugation (P)PMID:24723101ECO:0000314 direct assay evidence used in manual assertion

The expression of traJ was activated at low concentration of bile salts and decreased with increasing bile salt concentration. The expression patterns of traJ were corresponded with the conjugative transfer frequencies between S. typhimurium and e. coli.

challenge
updatedbyinstructorMOUSE:WNT11Cmb6159, Team Skinny Genes2015-11-17 15:18:41 CSTGO:0003281 ventricular septum development (P)PMID:22569553ECO:0000316 genetic interaction evidence used in manual assertion

Figure 2 A and D: they show both the wild type and the double mutant Wnt5a -/-;Wnt11-/-. It can also be seen in figure 2 B and C that the single mutants do not fully develop the ventricular septum

challenge
unacceptableBUCAI:END1Avf5209, Team Skinny Genes2015-11-17 14:40:00 CSTGO:0004530 deoxyribonuclease I activity (F)PMID:366ECO:0000315 mutant phenotype evidence used in manual assertion

Table 2 shows strain 577, which carries the end-14 mutation, is deficient in the major endonuclease

challenge
unacceptableSHIFL:Q83M61Avf5209, Team Skinny Genes2015-11-17 12:08:56 CSTGO:0004519 endonuclease activity (F)PMID:9133662ECO:0000314 direct assay evidence used in manual assertion

Both SbcC and SbcD polypeptides are required for the ATP-dependent double-strand exonuclease activity of SbcCD (Fig.3b) only the SbcD polypeptide is required for the ATP-independent single-strand endonuclease activity of SbcCD

challenge
unacceptableHUMAN:ID1Cmb6159, Team Skinny Genes2015-11-16 23:22:49 CSTGO:0001886 endothelial cell morphogenesis (P)PMID:26476925ECO:0000314 direct assay evidence used in manual assertion

Figure 1. shows the effect of the Id1 protein on endothelial progenitor cells proliferation and migration using RT-PCR, Western blotting, and MTT assay.

challenge
unacceptableHUMAN:OLR1Cmb6159, Team Skinny Genes2015-11-16 18:36:44 CSTGO:0006954 inflammatory response (P)PMID:26385009ECO:0000255 match to sequence model evidence used in manual assertion

Figure 1. shows the role of LOX-1 in atherosclerosis. OxLDL binds to LOX-1 on the endothelial cell surface triggering activation of an inflammatory reaction.

challenge
unacceptableSYNE7:KAICGwn5039, Team Skinny Genes2015-11-13 11:04:57 CSTGO:0032922 circadian regulation of gene expression (P)PMID:19666549ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1A. and 1B, KiaABC complex help regulate the circadian rhythms by gene expressing of wild type compared to a null mutant.

challenge
unacceptableECOLI:EX1Avf5209, Team Skinny Genes2015-11-02 10:46:00 CSTGO:0000175 3'-5'-exoribonuclease activity (F)PMID:4927675ECO:0000315 mutant phenotype evidence used in manual assertion

As shown in Table 3, the wildtype strain of the gene sbcB shows exonuclease activity. When the anitserum, that inhibits exonuclease activity, was added the exonuclease activity decreased proving the exonuclease activity of the crude lysates. To verify the sbcB gene activity, the gene was mutated, sbcB15 and when mutated the exonuclease activity decreased to show that the sbcB gene is responsible for exonuclease activity.

challenge
updatedbyinstructorHUMAN:VAV3Cmb6159, Team Skinny Genes2015-10-14 09:55:21 CDTGO:0001772 immunological synapse (C)PMID:15708849ECO:0000314 direct assay evidence used in manual assertion

Figure 1F. shows, using digital fluorescence microscopy, that Vav3 translocates to the plasma membrane and localizes to the immunological synapse upon T cell activation.

challenge
unacceptableHUMAN:BAG3Avf5209, Team Skinny Genes2015-10-14 09:53:51 CDTGO:0005737 cytoplasm (C)PMID:25149536ECO:0000314 direct assay evidence used in manual assertion

Immunohistochemical analysis of BAG3 expression in Figure 1 A, E and F.

challenge
updatedbyinstructorMOUSE:OLIG1Gwn5039, Team Skinny Genes2015-10-14 09:27:25 CDTGO:0014003 oligodendrocyte differentiation (P)PMID:25762682ECO:0000315 mutant phenotype evidence used in manual assertion

Figure #1, western blot and TUNEL assay.

challenge

What do the icons mean in the status column?

assessment icons.jpg

Pages in category "Team Skinny Genes"

The following 4 pages are in this category, out of 4 total.


Jump to pages starting with: A C G J