User:Ariana.brovarenko

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
unacceptable	BACSU:CHEV	2012-09-20 13:02:48 CDT	GO:0005622 intracellular (C)	PMID:11553614	ECO:0000314 direct assay evidence used in manual assertion	Figure 3 shows that more CheA-P was transfered at both temperatures than CheB. This can be proven by the darkness of the band.	challenge
acceptable	ECOLI:MQSR	2012-09-20 13:56:56 CDT	GO:2000145 quorum sensing (P)	PMID:16352847	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 5 shows that a mutation in the mqsR gene leads to almost no qseB transcription (qseB is a quorum sensing motility regulating 2 component regulon protein), as well as motA, another motility related gene.	challenge
unacceptable	STRCO:GCH1	2012-09-20 21:13:57 CDT	GO:0003934 GTP cyclohydrolase I activity (F)	PMID:12000953	ECO:0000314 direct assay evidence used in manual assertion	Figure 3 shows the secondary metabolites produced by S. coelicolor A3(2)	challenge
acceptable	LISMO:LNTA	2012-09-21 08:01:53 CDT	GO:0005576 extracellular region (C)	PMID:21252314	ECO:0000314 direct assay evidence used in manual assertion	Figure 1. The secreted virulence factor LntA targets the nuclear protein BAHD1.lntA is regulated by PrfA and sB.	challenge
unacceptable	MICLU:UVRA	2012-10-19 09:39:32 CDT	GO:0006281 DNA repair (P)	PMID:2549377	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 1	challenge
acceptable	SHIFL:ICSB	2012-10-19 21:45:59 CDT	GO:0009405 pathogenesis (P)	PMID:12753186	ECO:0000315 mutant phenotype evidence used in manual assertion	Figures 6B and 7:IpgA is required for the secretion of IcsB by the TTSS. Whole cell lysates and CR sup. from DipgA/pTB-IcsB-IpgA, DipgA/pTB-IcsB1-494 and DipgA grown in the presence of 0.1 mM IPTG were analysed by immunoblotting using antibodies specific for IcsB or IpgA.	challenge
unacceptable	STRMG:Q8VUG9	2012-10-21 10:25:57 CDT	GO:0046677 response to antibiotic (P)	PMID:12435673	ECO:0000314 direct assay evidence used in manual assertion	Figure 1: It is showing that strain XcB2, which is a mbrD mutant, is more sensitive to bacitracin.	challenge
unacceptable	ECOLI:MQSR	2012-11-03 19:56:08 CDT	GO:2000145 regulation of cell motility (P)	PMID:16352847	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 5 shows that a mutation in the mqsR gene leads to almost no qseB transcription (qseB is a quorum sensing motility regulating 2 component regulon protein), as well as motA, another motility related gene.	challenge
correctedthroughchallenges	STRMU:SUCP	2012-11-04 16:29:46 CST	GO:0005985 sucrose metabolic process (P)	PMID:2971020	ECO:0000314 direct assay evidence used in manual assertion	Figure 3	challenge
requireschanges	STRCO:OBG	2012-11-15 08:38:17 CST	GO:0006184 GTP catabolic process (P)	PMID:9786189	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 8: It is proposed that a decrease in the GTP-bound form of Obg is a crucial event for triggering development in Streptomyces coelicolor.	challenge

acceptable:3
unacceptable:5
requires_changes:1
flagged:0

Annotations challenged by Ariana.brovarenko

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
acceptable	Chelsea.jenney, Team DC2	HUMAN:MOXD1	GO:0005789 - endoplasmic reticulum membrane (C)	PMID:15337741	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 1

0 annotations fixed by Ariana.brovarenko