GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

Category:Team Polly Morphic

From GONUTS
Jump to: navigation, search

SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesMOUSE:MK08Wierzb16, Team Polly Morphic2012-04-14 13:05:12 CDTGO:0004708 MAP kinase kinase activity (F)PMID:12689591ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5B shows that JNK1 efficiently phosphorylates MAP and 5D shows that it is specific. At low concentrations, JNK1 is a predominant MAP2 kinase. In Figure 6A, JNK1 deficient mice displayed 3 fold lower labelling of MAP2 and in 6B MAP2 polypeptides are significantly lowered in JNK1 deficient mice. JNK1 is an important MAP2 kinase.

challenge
acceptableMOUSE:MK08Wierzb16, Team Polly Morphic2012-04-14 12:31:10 CDTGO:0048813 dendrite morphogenesis (P)PMID:16000625ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 shows that inhibition of JNK1 results in shorter and more numerous dendritic processes. Figures 7 and 8 support JNK1 involvement in the development of the shape and size of the dendritic processes by pictures and analyzation of the dendrites.

challenge
acceptableMOUSE:MK08Wierzb16, Team Polly Morphic2012-04-14 12:10:14 CDTGO:0001764 neuron migration (P)PMID:21297631ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2E, JNK1 deficient neurons migrate faster than wild type neurons, as 3 times as many JNK deficient cells had migrated. Figure 7E supports this, showing that JNK deficient cells migrate at a faster speed in a time lapse study. JNK1 is involved in migration of neurons.

challenge
acceptableHUMAN:EYSBruewera, Team Polly Morphic2012-04-12 12:55:56 CDTGO:0050908 detection of light stimulus involved in visual perception (P)PMID:18976725ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 shows the constriction of the visual field in individuals affected with a homozygous p.Tyr3156X mutation in EYS and a non-recordable ERG or ERG responses in a rod-cone pattern. One patient (4C) also demonstrated a photoreceptor dystrophy.

challenge
updatedbyinstructorMOUSE:GUC2FBruewera, Team Polly Morphic2012-04-12 12:26:12 CDTGO:0050908 detection of light stimulus involved in visual perception (P)PMID:17255100ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2B: At high intensity light stimulus, the a-wave and sensitivity of the scotopic GC2 (GUCY2F) -/- mouse were slightly reduced compared to the WT.

challenge
acceptableBOVIN:RPE65Bruewera, Team Polly Morphic2012-04-12 12:08:55 CDTGO:0004744 retinal isomerase activity (F)PMID:16096063ECO:0000314 direct assay evidence used in manual assertion

Figure 4,5. Fig. 4 shows the absence of isomerase activity activity in pRPE65-transerase 293T-RC cell homogenates using atROL as substrate and the presence of activity in the same cells using atRP as substrate. pRPE65-transfected likes do show isomerase activity.

challenge
requireschangesCHICK:O57480Bruewera, Team Polly Morphic2012-04-12 11:50:31 CDTGO:0004383 guanylate cyclase activity (F)PMID:9448321ECO:0000314 direct assay evidence used in manual assertion

Figure 2 shows the analysis of GC1 protein level expression in normal and rd/rd (retinal dystrophy affected)chicken retina using western blot probed with anti-retGC pAb GC2.

challenge
requireschanges?Wierzb16, Team Polly Morphic2012-04-12 11:34:27 CDTGO:0042476 odontogenesis (Figure 2 depicts the phenotypic differences between an IRF6 mutant and a wild type mouse. The incisors are evaginated and enlarged in the IRF6 mutant, indicating IRF6 plays a role in the development of the teeth. )PMID:22366192IMP: Inferred from Mutant Phenotype
challenge
updatedbyinstructorMOUSE:KMT2AWierzb16, Team Polly Morphic2012-04-11 23:00:46 CDTGO:0060216 definitive hemopoiesis (P)PMID:15556871ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2C shows the failure of MII-deficient cells to give rise to hematopoietic colonies. Figure 2 A and B shows the normal development of cells for MII and MII-deficient cells, indicating normal differentiation. Thus, MII-deficient cells develop normally until hematopoietic differentiation. The lack of differentiation results in a failure to develop a hematopoietic center in the body.

challenge
acceptableCANLF:F1PKQ6Bruewera, Team Polly Morphic2012-04-10 21:44:42 CDTGO:0050908 detection of light stimulus involved in visual perception (P)PMID:21521437ECO:0000315 mutant phenotype evidence used in manual assertion

Table 2 and Figure 3 show that the amplitudes of the 30Hz flicker response were significantly reduced in the dogs homozygous for the RPGRIP1 mutation compared to the control group.

challenge
updatedbyinstructorMOUSE:CCD66Bruewera, Team Polly Morphic2012-04-10 21:02:51 CDTGO:0050908 detection of light stimulus involved in visual perception (P)PMID:21680557ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3: Ccdc66 -/- mouse at 3 months revealed a reduced a-wave amplitude under scotopic conditions and a reduced b-wave amplitude under photopic conditions on a background intensity of 25 cd/m^2.

challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesCANFA:E7AIM5Bruewera, Team Polly Morphic2012-04-01 08:11:05 CDTGO:0050908 detection of light stimulus involved in visual perception (P)PMID:20806078ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3: Establishes ADAM9 mutation in dogs affected with crd3 in this study. Figure 4: ADAM9 mutation is crd3 affected dogs causes a frame shift mutation resulting in a premature stop codon at base 6 of exon 17. Figure 1:By 15 months of age ERG dysfunction is detected as reduced 30Hz flicker cone responses in dogs affected with crd3 due to ADAM9 mutation, and at later ages by continued deterioration of cone and rod responses in these affected dogs.

challenge
requireschanges?Wierzb16, Team Polly Morphic2012-03-29 12:48:24 CDTGO:0042981 regulation of apoptotic process (In Figure 1 (A, B, and C), the anti-CD147 testes show significant loss in size, weight, and internal cell counts. This is evidenced by comparison to testes with full expression of CD147 which are full, pink, larger, and have complete cell structures within. When CD147 is removed, apoptosis is not regulated and spermatocytes freely die within the testes.)PMID:22451502IMP: Inferred from Mutant Phenotype
challenge
requireschangesCANFA:PDE6ABruewera, Team Polly Morphic2012-03-29 11:34:07 CDTGO:0050908 detection of light stimulus involved in visual perception (P)PMID:18775863ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4: Average dark adapted a- and b- ERG wave amplitudes from mutant PDE6A puppies peaked at three weeks of age and were significantly smaller than control puppies of the same age. Mean light adapted a-wave amplitudes of affected dogs were lower than normal dogs at 3 weeks of age and decreased with increasing age.

challenge

Pages in category "Team Polly Morphic"

The following 2 pages are in this category, out of 2 total.


Jump to pages starting with: B W