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Category:Team McClintock

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StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableARATH:HOS1Cdmundy, Team McClintock2013-05-26 15:51:17 CDTGO:0010228 vegetative to reproductive phase transition of meristem (P)PMID:22960247ECO:0000315 mutant phenotype evidence used in manual assertion

Figures 1A and D show that quantitatively (by total leaves) and through photo comparison that hos1 mutants exhibit early flowering phenotype at both 23 and 16°C under LD conditions when compared to the C24 ecotype background. These mutants display an ambient temperature-insensitive phenotype.

challenge
requireschanges?Cdmundy, Team McClintock2013-05-26 15:48:14 CDTGO:1901371 regulation of leaf morphogenesis (Figure 2A provides an illustration of cop1 mutant inability to elongate leaf petiole in response to low R:FR (shade) conditions. Figure 2B quantifies this response in comparison to wild type, which exhibits typical elongation response. )PMID:23093358IMP: Inferred from Mutant Phenotype
challenge
acceptableMAIZE:B6TGM8Cdmundy, Team McClintock2013-05-26 15:46:07 CDTGO:0004672 protein kinase activity (F)PMID:23469147ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5B demonstrates in vitro ZmSNAC1 phosphorylation by ZmOST1. Figure 5C illustrates that kinase activity is lost in extracts from the ost1-2allele and recovered in extracts of the ZmOST1/ost1-2 complemented line (Arabidopsis).

challenge
updatedbyinstructorSOYBN:A7LHG5Cdmundy, Team McClintock2013-05-26 15:44:01 CDTGO:0009737 response to abscisic acid stimulus (P)PMID:23606412ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3D illustrates that three transgenic Arabidopsis lines with overexpression of GsWRKY20 were able to germinate much faster than wild type when exposed to 0.8 μM ABA. Figure 3F shows that overexpressing GsWRKY20 Arabidopsis lines had significantly higher percentages of leaf opening and greening at different ABA concentrations than wild type. Fig 8

challenge
acceptableCHRMO:L0AR29Cdmundy, Team McClintock2013-05-26 15:36:07 CDTGO:2000032 regulation of secondary shoot formation (P)PMID:23613914ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5B shows that overexpression of DgBRC1 in brc1-1 Arabidopsis mutant lines was indistinguishable from the wild type lateral branching. Table S2 shows that the number of rosette branches was reduced in DgBRC1 overexpressing wild type plants.

challenge
acceptableORYSJ:Q6ESJ0Cdmundy, Team McClintock2013-05-26 15:33:37 CDTGO:2000280 regulation of root development (P)PMID:23683934ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4E shows that three GPX3 post-transcriptional knockdown transgenic lines exhibit shorter root lengths when compared to control plants normalized for GPX3 expression.

challenge
acceptableORYSJ:Q6ESJ0Cdmundy, Team McClintock2013-05-26 15:33:37 CDTGO:0048831 regulation of shoot system development (P)PMID:23683934ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4D shows that three GPX3 post-transcriptional knockdown transgenic lines exhibit shorter shoot lengths when compared to control plants normalized for GPX3 expression.

challenge
acceptableARATH:LOFG2Cdmundy, Team McClintock2013-05-26 15:30:46 CDTGO:0009737 response to abscisic acid stimulus (P)PMID:23696092ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3A shows that atairp3/log2-2 knockout and 35S:AtAIRP3-RNAi knockdown mutants exhibit reduced ABA-mediated inhibition of germination. Figure 3B shows that atairp3/log2-2 mutants have a higher radical emergence percentage than wild type at different concentrations of abscisic acid, as well as substantially higher percentages of cotyledon greening.

challenge
acceptableARATH:LOFG2Cdmundy, Team McClintock2013-05-26 15:29:22 CDTGO:1901527 abscisic acid mediated signaling pathway involved in stomatal movement (P)PMID:23696092ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3C shows that atairp3/log2-2 knockout and 35S:AtAIRP3-RNAi knockdown mutants exhibit impaired stomatal closure response to different concentrations of abscisic acid when compared to wild type. Figure 3D graphically quantifies this impaired response.

challenge
acceptableMAIZE:B6TGM8Cdmundy, Team McClintock2013-05-26 15:27:19 CDTGO:2000070 regulation of response to water deprivation (P)PMID:23469147ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1C shows partial phenotypic ost1-2 complementation by ZmOST1 in drought signaling through comparing temperature of detached leaves by infrared thermography.

challenge
updatedbyinstructorARATH:CCH11Cdmundy, Team McClintock2013-05-12 17:36:44 CDTGO:0009637 response to blue light (P)PMID:23656895ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3D shows that under blue light, the cych;1 RNAi mutants had a much smaller stomatal aperature width than wild type, similar to cry1 and cry2 mutant controls.

challenge
updatedbyinstructorARATH:CCH11Cdmundy, Team McClintock2013-05-12 17:35:28 CDTGO:0009414 response to water deprivation (P)PMID:23656895ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2A shows the drought response of soil-grown cych;1 RNAi mutants plants compared to wt: mutant plants exhibit less wilting. Figure 2B shows that after re-watering, 3% of wt plants survived compared to 70% of mutants. Figure 2C shows that detached leaves of mutants lose water more slowly compared to wt.

challenge
updatedbyinstructorBRADI:A0A0Q3JRW7Cdmundy, Team McClintock2013-05-11 19:11:55 CDTGO:0010229 inflorescence development (P)PMID:23355632ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4C and table II show that during reproductive growth, mos1 inflorescence produced approximately twice the number of lateral spikelets compared to wild type.

Figure 5C shows that in mos1 the branch axillary meristems formed lateral spikelets as the branches transitioned to the awn initiation stage.

challenge
updatedbyinstructorARATH:NAC29Cdmundy, Team McClintock2013-04-28 16:23:53 CDTGO:0009835 fruit ripening (P)PMID:23066145ECO:0000315 mutant phenotype evidence used in manual assertion

Figures 1a-c demonstrate delayed silique senescence in atnap knockout plants when compared to age-matched wildtype.

challenge
updatedbyinstructorARATH:BRN2LCdmundy, Team McClintock2013-04-28 00:29:25 CDTGO:0048573 photoperiodism, flowering (P)PMID:23437850ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2

challenge
updatedbyinstructorARATH:MYST1Cdmundy, Team McClintock2013-04-27 20:05:57 CDTGO:0043995 histone acetyltransferase activity (H4-K5 specific) (F)PMID:23273925ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5A shows a Western blot analysis in amiRNA-HAM1 (HAM1 knockdown) lines compared to wildtype that demonstrates a significant decrease in global H4K5 acetylation. In contrast, H4K5 acetylation was significantly increased in HAM1-OE (over-expressed) lines.

challenge
updatedbyinstructorARATH:MYST1Cdmundy, Team McClintock2013-04-27 20:00:31 CDTGO:2000028 regulation of photoperiodism, flowering (P)PMID:23273925ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1C shows that amiRNA-HAM1 (HAM1 knockdown) lines grew normally as the wild-type Col in the vegetative stage, but flowered earlier than Col under both LD and SD conditions.

Figure 3B demonstrates that HAM1-overexpressing transgenic plants (HAM1-OE) displayed a delayed flowering time phenotype compared to wild type, suggesting that HAM1 is a negative regulator of flowering.

challenge
updatedbyinstructorMAIZE:RIBRXCdmundy, Team McClintock2013-04-14 00:24:21 CDTGO:0009507 chloroplast (C)PMID:23150645ECO:0000314 direct assay evidence used in manual assertion

Figure 6 shows radiolabeled Maize PyrR plastid localization.

challenge
updatedbyinstructorMAIZE:RIBRXCdmundy, Team McClintock2013-04-14 00:11:17 CDTGO:0004159 dihydropyrimidine dehydrogenase (NAD+) activity (F)PMID:23150645ECO:0000314 direct assay evidence used in manual assertion

Figure 3B shows that ZmPyrR complements reductase but not deaminase function of E. coli RibD.

Figure 4A shows the disappearance of 5-amino-6-ribosylamino-2,4(1H,3H)-pyrimidinedione 5’-P and Figure 4B shows the appearance of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5’-P in recombinant maize PyR. E. coli RibA, demonstrating pyrimidine reductase activity in vitro.

challenge

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Pages in category "Team McClintock"

The following 3 pages are in this category, out of 3 total.


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