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ARATH:CCH11

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Species (Taxon ID) Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s) CYCH1-1 (synonyms: CYCH1)
Protein Name(s) Cyclin-H1-1

CycH1

External Links
UniProt Q8W5S1
EMBL AB051072
AC007478
CP002688
AK118707
RefSeq NP_198114.2
UniGene At.27359
ProteinModelPortal Q8W5S1
SMR Q8W5S1
BioGrid 18098
IntAct Q8W5S1
STRING 3702.AT5G27620.1-P
PaxDb Q8W5S1
PRIDE Q8W5S1
EnsemblPlants AT5G27620.1
GeneID 832824
KEGG ath:AT5G27620
GeneFarm 3392
TAIR AT5G27620
eggNOG COG5333
HOGENOM HOG000030045
InParanoid Q8W5S1
KO K06634
OMA DFAVWHA
PhylomeDB Q8W5S1
Reactome REACT_230366
REACT_231323
REACT_244453
REACT_247918
REACT_251417
REACT_251761
REACT_257408
REACT_259973
REACT_260138
REACT_260665
REACT_261061
REACT_261268
PRO PR:Q8W5S1
Proteomes UP000006548
Genevestigator Q8W5S1
GO GO:0005737
GO:0005634
GO:0070985
GO:0016538
GO:0004672
GO:0007049
GO:0051301
GO:0006468
GO:0072593
GO:0000079
GO:2000070
GO:0010119
GO:0006355
GO:0009414
GO:1990069
GO:0006351
Gene3D 1.10.472.10
InterPro IPR013763
IPR015429
IPR006671
IPR023598
IPR027081
PANTHER PTHR10026
PTHR10026:SF8
Pfam PF00134
PIRSF PIRSF028758
SMART SM00385
SUPFAM SSF47954

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0009414

response to water deprivation

PMID:23656895[1]

ECO:0000315

P

Figure 2A shows the drought response of soil-grown cych;1 RNAi mutants plants compared to wt: mutant plants exhibit less wilting. Figure 2B shows that after re-watering, 3% of wt plants survived compared to 70% of mutants. Figure 2C shows that detached leaves of mutants lose water more slowly compared to wt.

complete
CACAO 8308

GO:0009637

response to blue light

PMID:23656895[1]

ECO:0000315

P

Figure 3D shows that under blue light, the cych;1 RNAi mutants had a much smaller stomatal aperature width than wild type, similar to cry1 and cry2 mutant controls.

complete
CACAO 8310

involved_in

GO:0009637

response to blue light

PMID:23656895[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009414

response to water deprivation

PMID:23656895[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:2000070

regulation of response to water deprivation

PMID:23656895[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1990069

stomatal opening

PMID:23656895[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0072593

reactive oxygen species metabolic process

PMID:23656895[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010119

regulation of stomatal movement

PMID:23656895[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009414

response to water deprivation

PMID:23656895[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

PMID:23656895[1]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:16856985[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:23656895[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16856985[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004672

protein kinase activity

PMID:16856985[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0070985

transcription factor TFIIK complex

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000002807
PomBase:SPBP16F5.02
SGD:S000006229

C

Seeded From UniProt

complete

enables

GO:0016538

cyclin-dependent protein serine/threonine kinase regulator activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004597
PANTHER:PTN000002458
PomBase:SPBC530.13
PomBase:SPBP16F5.02
SGD:S000004216
SGD:S000004970
SGD:S000006229
UniProtKB:C9K506

F

Seeded From UniProt

complete

contributes_to

GO:0008353

RNA polymerase II CTD heptapeptide repeat kinase activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0022936
PANTHER:PTN000002807
UniProtKB:P51946

F

Seeded From UniProt

complete

involved_in

GO:0006357

regulation of transcription by RNA polymerase II

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004597
PANTHER:PTN000002458
PomBase:SPBC32F12.06
PomBase:SPBC530.13
PomBase:SPBP16F5.02
SGD:S000004216
SGD:S000004970
SGD:S000006229
UniProtKB:O60563
UniProtKB:O60583
UniProtKB:O75909
UniProtKB:P51946
WB:WBGene00000508
WB:WBGene00009650

P

Seeded From UniProt

complete

part_of

GO:0005675

transcription factor TFIIH holo complex

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0022936
PANTHER:PTN000002807
PomBase:SPBP16F5.02
SGD:S000006229
UniProtKB:P51946

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0025455
MGI:MGI:1328363
MGI:MGI:1913921
MGI:MGI:1921539
PANTHER:PTN000002458
PomBase:SPBC530.13
PomBase:SPBP16F5.02
RGD:70905
SGD:S000003543
TAIR:locus:2143671
TAIR:locus:2196919
UniProtKB:O60563
UniProtKB:O60583
UniProtKB:Q5B399
UniProtKB:Q96S94
UniProtKB:Q9UK58

C

Seeded From UniProt

complete

involved_in

GO:0000079

regulation of cyclin-dependent protein serine/threonine kinase activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0022936
PANTHER:PTN000002807
PomBase:SPBP16F5.02
SGD:S000006229
UniProtKB:C9K506
UniProtKB:Q8IKK0

P

Seeded From UniProt

complete

involved_in

GO:0006468

protein phosphorylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004672

P

Seeded From UniProt

complete

involved_in

GO:0006468

protein phosphorylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0008353

P

Seeded From UniProt

complete

involved_in

GO:0051301

cell division

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0132

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0007049

cell cycle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0131

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Zhou, XF et al. (2013) CYCLIN H;1 regulates drought stress responses and blue light-induced stomatal opening by inhibiting reactive oxygen species accumulation in Arabidopsis. Plant Physiol. 162 1030-41 PubMed GONUTS page
  2. ↑ 2.0 2.1 2.2 Shimotohno, A et al. (2006) Diverse phosphoregulatory mechanisms controlling cyclin-dependent kinase-activating kinases in Arabidopsis. Plant J. 47 701-10 PubMed GONUTS page
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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