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User:Larkinkr

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CACAO Spring 2014

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptableARATH:IPT62014-04-06 18:58:34 CDTGO:0009824 AMP dimethylallyltransferase activity (F)PMID:12529525ECO:0000315 mutant phenotype evidence used in manual assertion

Fig. 6 shows the activation of cytokinin marker genes in the pga22 gain-of-function mutant.

Fig. 7 depicts increasing cytokinin levels in the pga22 mutant plants and AtIPT8 catalyzes the production isopentenyladenosine-5′-monophosphate (iPMP) and isopentenyladenosine (iPA). This suggests that AtIPT8/PGA22 may direct cytokinin biosynthesis.


challenge

acceptable:0
unacceptable:1
requires_changes:0
flagged:0

Annotations challenged by Larkinkr

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history
requireschangesDavis118,
MichSt14A 31
HELP3:D7FDK4GO:0030255 - protein secretion by the type IV secretion system (P)PMID:22919661ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 2
unacceptableDeasonni,
MichSt14A 6
LISSS:D3UPC7GO:0044406 - adhesion of symbiont to host (Fig 4 shows that fbpA deletion mutants of listeria monocytogenes have decreased adhesion to hepatocytes and macrophages, also that mutants over-expressing fbpA had adhesion similar to the wild-type.)PMID:23586629IMP: Inferred from Mutant Phenotype challengeC: 1
updatedbyinstructorPawlos25,
MichSt14A 42
SYNP2:RBSGO:0016984 - ribulose-bisphosphate carboxylase activity (F)PMID:6408075ECO:0000314 direct assay evidence used in manual assertionchallengeC: 3

fixed by Rdesai525
updatedbyinstructorRousepie,
MichSt14A 46
ARATH:CAMT3GO:0042409 - caffeoyl-CoA O-methyltransferase activity (F)PMID:23416302ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 1

fixed by Larkinkr
updatedbyinstructorShookjoh,
MichSt14A 21
SERMA:O24823GO:0008800 - beta-lactamase activity (F)PMID:9449282ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 1
unacceptableHuverdav,
MichSt14A 36
ECOLX:MCCFGO:0008236 - serine-type peptidase activity (F)PMID:22516613ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 1

1 annotations fixed by Larkinkr

What do the icons mean in the status column?

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