GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
Have any questions? Please email us at ecoliwiki@gmail.com
E. coli Annotation Targets
References
See Help:References for how to manage references in GONUTS.
- ↑ James, ES & Cronan, JE (2004) Expression of two Escherichia coli acetyl-CoA carboxylase subunits is autoregulated. J. Biol. Chem. 279 2520-7 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Andrews, SC et al. (1997) A 12-cistron Escherichia coli operon (hyf) encoding a putative proton-translocating formate hydrogenlyase system. Microbiology (Reading, Engl.) 143 ( Pt 11) 3633-47 PubMed GONUTS page
- ↑ Weatherford, SC et al. (1972) Separation of Escherichia coli ribonucleases on a DNA agarose column and the identification of an RNase H activity. Biochem. Biophys. Res. Commun. 49 1307-15 PubMed GONUTS page
- ↑ Kanaya, S & Crouch, RJ (1983) DNA sequence of the gene coding for Escherichia coli ribonuclease H. J. Biol. Chem. 258 1276-81 PubMed GONUTS page
- ↑ 5.0 5.1 Løbner-Olesen, A & Marinus, MG (1992) Identification of the gene (aroK) encoding shikimic acid kinase I of Escherichia coli. J. Bacteriol. 174 525-9 PubMed GONUTS page
- ↑ Jiang, GR et al. (2001) Regulation of the ldhA gene, encoding the fermentative lactate dehydrogenase of Escherichia coli. Microbiology (Reading, Engl.) 147 2437-46 PubMed GONUTS page
- ↑ Sampaio, MM et al. (2004) Phosphotransferase-mediated transport of the osmolyte 2-O-alpha-mannosyl-D-glycerate in Escherichia coli occurs by the product of the mngA (hrsA) gene and is regulated by the mngR (farR) gene product acting as repressor. J. Biol. Chem. 279 5537-48 PubMed GONUTS page
- ↑ Matsuoka, M & McFadden, BA (1988) Isolation, hyperexpression, and sequencing of the aceA gene encoding isocitrate lyase in Escherichia coli. J. Bacteriol. 170 4528-36 PubMed GONUTS page
- ↑ Rieul, C et al. (1988) Nucleotide sequence of the aceA gene coding for isocitrate lyase in Escherichia coli. Nucleic Acids Res. 16 5689 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 Woods, SA et al. (1988) Two biochemically distinct classes of fumarase in Escherichia coli. Biochim. Biophys. Acta 954 14-26 PubMed GONUTS page
- ↑ Pao, GM & Saier, MH Jr (1995) Response regulators of bacterial signal transduction systems: selective domain shuffling during evolution. J. Mol. Evol. 40 136-54 PubMed GONUTS page
- ↑ Parkinson, JS & Kofoid, EC (1992) Communication modules in bacterial signaling proteins. Annu. Rev. Genet. 26 71-112 PubMed GONUTS page
- ↑ Stock, JB et al. (1990) Signal transduction in bacteria. Nature 344 395-400 PubMed GONUTS page
- ↑ Parkinson, JS (1993) Signal transduction schemes of bacteria. Cell 73 857-71 PubMed GONUTS page
- ↑ Spinelli, SL et al. (1999) Transient ADP-ribosylation of a 2'-phosphate implicated in its removal from ligated tRNA during splicing in yeast. J. Biol. Chem. 274 2637-44 PubMed GONUTS page
- ↑ Steiger, MA et al. (2001) Substrate recognition by a yeast 2'-phosphotransferase involved in tRNA splicing and by its Escherichia coli homolog. Biochemistry 40 14098-105 PubMed GONUTS page
- ↑ Hu, QD et al. (2003) A human homolog of the yeast gene encoding tRNA 2'-phosphotransferase: cloning, characterization and complementation analysis. Cell. Mol. Life Sci. 60 1725-32 PubMed GONUTS page
- ↑ Delbaere, LT et al. (2004) Structure/function studies of phosphoryl transfer by phosphoenolpyruvate carboxykinase. Biochim. Biophys. Acta 1697 271-8 PubMed GONUTS page
- ↑ Kinghorn, SM et al. (2002) Physiological analysis of the role of truB in Escherichia coli: a role for tRNA modification in extreme temperature resistance. Microbiology (Reading, Engl.) 148 3511-20 PubMed GONUTS page
- ↑ Smith, JM et al. (1988) The identity of Escherichia coli bacterioferritin and cytochrome b1. Biochem. J. 255 737-40 PubMed GONUTS page
- ↑ Yariv, J (1996) Circumstantial evidence for cytochrome b1 involvement in the functioning of lac-permease in respiring Escherichia coli. J. Theor. Biol. 182 459-62 PubMed GONUTS page
- ↑ Yang, X et al. (2000) Iron oxidation and hydrolysis reactions of a novel ferritin from Listeria innocua. Biochem. J. 349 Pt 3 783-6 PubMed GONUTS page
- ↑ Jung, Y et al. (2001) High-level production of heme-containing holoproteins in Escherichia coli. Appl. Microbiol. Biotechnol. 55 187-91 PubMed GONUTS page
- ↑ Grady, JK et al. (2002) Characterization of the H- and L-subunit ratios of ferritins by sodium dodecyl sulfate-capillary gel electrophoresis. Anal. Biochem. 302 263-8 PubMed GONUTS page
- ↑ Leimkühler, S & Rajagopalan, KV (2001) A sulfurtransferase is required in the transfer of cysteine sulfur in the in vitro synthesis of molybdopterin from precursor Z in Escherichia coli. J. Biol. Chem. 276 22024-31 PubMed GONUTS page
- ↑ Shimaoka, M et al. (2005) Effects of edd and pgi disruptions on inosine accumulation in Escherichia coli. Biosci. Biotechnol. Biochem. 69 1248-55 PubMed GONUTS page
- ↑ Bell, PJ et al. (1989) Nucleotide sequence of the FNR-regulated fumarase gene (fumB) of Escherichia coli K-12. J. Bacteriol. 171 3494-503 PubMed GONUTS page
- ↑ 28.0 28.1 28.2 Ray, JM et al. (1988) Mutational analysis of the catalytic and feedback sites of the tryptophan-sensitive 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase of Escherichia coli. J. Bacteriol. 170 5500-6 PubMed GONUTS page
- ↑ Conlin, CA et al. (1992) Escherichia coli prlC encodes an endopeptidase and is homologous to the Salmonella typhimurium opdA gene. J. Bacteriol. 174 5881-7 PubMed GONUTS page
- ↑ Miller, S et al. (1997) Mutations in the glutathione-gated KefC K+ efflux system of Escherichia coli that cause constitutive activation. J. Biol. Chem. 272 24942-7 PubMed GONUTS page
- ↑ Yamamoto, K et al. (2005) Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli. J. Biol. Chem. 280 1448-56 PubMed GONUTS page
- ↑ 32.0 32.1 () PubMed GONUTS page
- ↑ Lewis, LK & Mount, DW (1992) Interaction of LexA repressor with the asymmetric dinG operator and complete nucleotide sequence of the gene. J. Bacteriol. 174 5110-6 PubMed GONUTS page
- ↑ Lambalot, RH & Walsh, CT (1995) Cloning, overproduction, and characterization of the Escherichia coli holo-acyl carrier protein synthase. J. Biol. Chem. 270 24658-61 PubMed GONUTS page
- ↑ Bouvier, J et al. (1984) Nucleotide sequence and expression of the Escherichia coli dapB gene. J. Biol. Chem. 259 14829-34 PubMed GONUTS page
- ↑ Roman, E et al. (2003) Overexpression of UDP-glucose dehydrogenase in Escherichia coli results in decreased biosynthesis of K5 polysaccharide. Biochem. J. 374 767-72 PubMed GONUTS page
- ↑ Spedaliere, CJ et al. (2000) Functional importance of motif I of pseudouridine synthases: mutagenesis of aligned lysine and proline residues. Biochemistry 39 9459-65 PubMed GONUTS page
- ↑ Urbonavicius, J et al. (2003) Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting. RNA 9 760-8 PubMed GONUTS page
- ↑ Phannachet, K et al. (2005) Dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase. Biochemistry 44 15488-94 PubMed GONUTS page
- ↑ Gentry, DR & Burgess, RR (1989) rpoZ, encoding the omega subunit of Escherichia coli RNA polymerase, is in the same operon as spoT. J. Bacteriol. 171 1271-7 PubMed GONUTS page
- ↑ Gentry, DR & Burgess, RR (1986) The cloning and sequence of the gene encoding the omega subunit of Escherichia coli RNA polymerase. Gene 48 33-40 PubMed GONUTS page
- ↑ 42.0 42.1 Buck, D et al. (1986) Cloning and expression of the succinyl-CoA synthetase genes of Escherichia coli K12. J. Gen. Microbiol. 132 1753-62 PubMed GONUTS page
- ↑ 43.0 43.1 Bridger, WA et al. (1987) The subunits of succinyl-coenzyme A synthetase--function and assembly. Biochem. Soc. Symp. 54 103-11 PubMed GONUTS page
- ↑ 44.0 44.1 Buck, D & Guest, JR (1989) Overexpression and site-directed mutagenesis of the succinyl-CoA synthetase of Escherichia coli and nucleotide sequence of a gene (g30) that is adjacent to the suc operon. Biochem. J. 260 737-47 PubMed GONUTS page
- ↑ 45.0 45.1 Reed, JL et al. (2003) An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol. 4 R54 PubMed GONUTS page
- ↑ Karasawa, K & Nojima, S (1991) Lysophospholipases from Escherichia coli. Meth. Enzymol. 197 437-45 PubMed GONUTS page
- ↑ Vitovski, S (1993) Phenylacetate-coenzyme A ligase is induced during growth on phenylacetic acid in different bacteria of several genera. FEMS Microbiol. Lett. 108 1-5 PubMed GONUTS page
- ↑ 48.0 48.1 48.2 48.3 48.4 Serres, MH et al. (2001) A functional update of the Escherichia coli K-12 genome. Genome Biol. 2 RESEARCH0035 PubMed GONUTS page
- ↑ McCandliss, RJ et al. (1978) 3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase. Purification and molecular characterization of the phenylalanine-sensitive isoenzyme from Escherichia coli. J. Biol. Chem. 253 4259-65 PubMed GONUTS page
- ↑ Ohnishi, K (1990) Possible evolutionary origin of primitive protein-encoding mRNAs as a virusoid-like ribo-organism. Nucleic Acids Symp. Ser. 39-40 PubMed GONUTS page
- ↑ Rivera-León, R et al. (1995) High-level expression of soluble recombinant RNase P protein from Escherichia coli. J. Bacteriol. 177 2564-6 PubMed GONUTS page
- ↑ Park, BH et al. (1998) Expression of C5 protein, the protein component of Escherichia coli RNase P, from the tac promoter. Mol. Cells 8 96-100 PubMed GONUTS page
- ↑ Baer, MF et al. (1990) Preparation and characterization of RNase P from Escherichia coli. Meth. Enzymol. 181 569-82 PubMed GONUTS page
- ↑ Suzuki, H & Kumagai, H (2001) [gamma-glutamyltranspeptidase: a new member of Ntn-hydrolase superfamily]. Tanpakushitsu Kakusan Koso 46 1842-8 PubMed GONUTS page
- ↑ Suzuki, H & Kumagai, H (1989) [Gamma-glutamyltranspeptidase from Escherichia coli K-12]. Seikagaku 61 491-6 PubMed GONUTS page
- ↑ Suzuki, H et al. (1993) Escherichia coli K-12 can utilize an exogenous gamma-glutamyl peptide as an amino acid source, for which gamma-glutamyltranspeptidase is essential. J. Bacteriol. 175 6038-40 PubMed GONUTS page
- ↑ Kumagai, H et al. (1993) Crystallization and preliminary X-ray analysis of gamma-glutamyltranspeptidase from Escherichia coli K-12. J. Mol. Biol. 234 1259-62 PubMed GONUTS page
- ↑ Suzuki, H et al. (2002) Improvement of the bitter taste of amino acids through the transpeptidation reaction of bacterial gamma-glutamyltranspeptidase. J. Agric. Food Chem. 50 313-8 PubMed GONUTS page
- ↑ Millar, G & Coggins, JR (1986) The complete amino acid sequence of 3-dehydroquinate synthase of Escherichia coli K12. FEBS Lett. 200 11-7 PubMed GONUTS page
- ↑ Bochkareva, ES et al. (2002) Identification and characterization of the Escherichia coli stress protein UP12, a putative in vivo substrate of GroEL. Eur. J. Biochem. 269 3032-40 PubMed GONUTS page
- ↑ Clark, D (1981) Regulation of fatty acid degradation in Escherichia coli: analysis by operon fusion. J. Bacteriol. 148 521-6 PubMed GONUTS page
- ↑ Hampton, RY & Raetz, CR (1992) Lipid A 4'-kinase from Escherichia coli: enzyme assay and preparation of 4'-32P-labeled probes of high specific radioactivity. Meth. Enzymol. 209 466-75 PubMed GONUTS page
- ↑ Bjedov, I et al. (2003) Polymorphism of genes encoding SOS polymerases in natural populations of Escherichia coli. DNA Repair (Amst.) 2 417-26 PubMed GONUTS page
- ↑ Aiba, A & Mizobuchi, K (1989) Nucleotide sequence analysis of genes purH and purD involved in the de novo purine nucleotide biosynthesis of Escherichia coli. J. Biol. Chem. 264 21239-46 PubMed GONUTS page
- ↑ Sampei, G & Mizobuchi, K (1989) The organization of the purL gene encoding 5'-phosphoribosylformylglycinamide amidotransferase of Escherichia coli. J. Biol. Chem. 264 21230-8 PubMed GONUTS page
- ↑ Snell, KD et al. (2002) YfcX enables medium-chain-length poly(3-hydroxyalkanoate) formation from fatty acids in recombinant Escherichia coli fadB strains. J. Bacteriol. 184 5696-705 PubMed GONUTS page
- ↑ Gutknecht, R et al. (2001) The dihydroxyacetone kinase of Escherichia coli utilizes a phosphoprotein instead of ATP as phosphoryl donor. EMBO J. 20 2480-6 PubMed GONUTS page
- ↑ Siebold, C et al. (2003) A mechanism of covalent substrate binding in the x-ray structure of subunit K of the Escherichia coli dihydroxyacetone kinase. Proc. Natl. Acad. Sci. U.S.A. 100 8188-92 PubMed GONUTS page
- ↑ Anastasi, A & Barrett, AJ (1995) Pitrilysin. Meth. Enzymol. 248 684-92 PubMed GONUTS page
- ↑ Becker, AB & Roth, RA (1995) Insulysin and pitrilysin: insulin-degrading enzymes of mammals and bacteria. Meth. Enzymol. 248 693-703 PubMed GONUTS page
- ↑ Kajie, S et al. (1991) Molecular cloning and DNA sequence of dniR, a gene affecting anaerobic expression of the Escherichia coli hexaheme nitrite reductase. FEMS Microbiol. Lett. 67 205-11 PubMed GONUTS page
- ↑ Bateman, A & Bycroft, M (2000) The structure of a LysM domain from E. coli membrane-bound lytic murein transglycosylase D (MltD). J. Mol. Biol. 299 1113-9 PubMed GONUTS page
- ↑ 73.0 73.1 73.2 Xi, H et al. (2000) Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage. J. Bacteriol. 182 5332-41 PubMed GONUTS page
- ↑ 74.0 74.1 74.2 Eisenberg, ME et al. (2009) Casual sex and psychological health among young adults: is having "friends with benefits" emotionally damaging? Perspect Sex Reprod Health 41 231-7 PubMed GONUTS page
- ↑ Ferrández, A et al. (1997) Genetic characterization and expression in heterologous hosts of the 3-(3-hydroxyphenyl)propionate catabolic pathway of Escherichia coli K-12. J. Bacteriol. 179 2573-81 PubMed GONUTS page
- ↑ Truniger, V & Boos, W (1994) Mapping and cloning of gldA, the structural gene of the Escherichia coli glycerol dehydrogenase. J. Bacteriol. 176 1796-800 PubMed GONUTS page
- ↑ Palm, D et al. () Evolution of catalytic and regulatory sites in phosphorylases. Nature 313 500-2 PubMed GONUTS page
- ↑ Bartl, F et al. (1999) Proton relay system in the active site of maltodextrinphosphorylase via hydrogen bonds with large proton polarizability: an FT-IR difference spectroscopy study. Eur. Biophys. J. 28 200-7 PubMed GONUTS page
- ↑ Griessler, R et al. (2000) Mechanism of thermal denaturation of maltodextrin phosphorylase from Escherichia coli. Biochem. J. 346 Pt 2 255-63 PubMed GONUTS page
- ↑ Zheng, Y et al. (2005) Characterization of two new aminopeptidases in Escherichia coli. J. Bacteriol. 187 3671-7 PubMed GONUTS page
- ↑ Darlison, MG et al. (1984) Nucleotide sequence of the sucA gene encoding the 2-oxoglutarate dehydrogenase of Escherichia coli K12. Eur. J. Biochem. 141 351-9 PubMed GONUTS page
- ↑ DeFeyter, RC et al. (1986) Nucleotide sequence of the transcription unit containing the aroL and aroM genes from Escherichia coli K-12. J. Bacteriol. 165 233-9 PubMed GONUTS page
- ↑ DeFeyter, RC & Pittard, J (1986) Purification and properties of shikimate kinase II from Escherichia coli K-12. J. Bacteriol. 165 331-3 PubMed GONUTS page
- ↑ Millar, G et al. (1986) The cloning and expression of the aroL gene from Escherichia coli K12. Purification and complete amino acid sequence of shikimate kinase II, the aroL-gene product. Biochem. J. 237 427-37 PubMed GONUTS page
- ↑ Yamada, M et al. (1999) Characterization of the ssnA gene, which is involved in the decline of cell viability at the beginning of stationary phase in Escherichia coli. J. Bacteriol. 181 1838-46 PubMed GONUTS page
- ↑ Tiedeman, AA et al. (1989) Nucleotide sequence analysis of the purEK operon encoding 5'-phosphoribosyl-5-aminoimidazole carboxylase of Escherichia coli K-12. J. Bacteriol. 171 205-12 PubMed GONUTS page
- ↑ Mueller, EJ et al. (1994) N5-carboxyaminoimidazole ribonucleotide: evidence for a new intermediate and two new enzymatic activities in the de novo purine biosynthetic pathway of Escherichia coli. Biochemistry 33 2269-78 PubMed GONUTS page
- ↑ Thoden, JB et al. (1999) Three-dimensional structure of N5-carboxyaminoimidazole ribonucleotide synthetase: a member of the ATP grasp protein superfamily. Biochemistry 38 15480-92 PubMed GONUTS page
- ↑ Meyer, E et al. (1992) Purification and characterization of the purE, purK, and purC gene products: identification of a previously unrecognized energy requirement in the purine biosynthetic pathway. Biochemistry 31 5022-32 PubMed GONUTS page
- ↑ Watanabe, W et al. (1989) Identification and sequence analysis of Escherichia coli purE and purK genes encoding 5'-phosphoribosyl-5-amino-4-imidazole carboxylase for de novo purine biosynthesis. J. Bacteriol. 171 198-204 PubMed GONUTS page
- ↑ Yang, J et al. (2009) The iron-sulfur cluster of pyruvate formate-lyase activating enzyme in whole cells: cluster interconversion and a valence-localized [4Fe-4S]2+ state. Biochemistry 48 9234-41 PubMed GONUTS page
- ↑ Schneider, E et al. (1992) Molecular characterization of the MalT-dependent periplasmic alpha-amylase of Escherichia coli encoded by malS. J. Biol. Chem. 267 5148-54 PubMed GONUTS page
- ↑ Cheng, ZF et al. (1998) The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R. J. Biol. Chem. 273 14077-80 PubMed GONUTS page
- ↑ Carter, JR et al. (1993) Identification, molecular cloning and characterization of the gene encoding the chi subunit of DNA polymerase III holoenzyme of Escherichia coli. Mol. Gen. Genet. 241 399-408 PubMed GONUTS page
- ↑ Xiao, H et al. (1993) DNA polymerase III accessory proteins. III. holC and holD encoding chi and psi. J. Biol. Chem. 268 11773-8 PubMed GONUTS page
- ↑ Del Vecchio, P et al. (2003) Effect of trifluoroethanol on the conformational stability of a hyperthermophilic esterase: a CD study. Biophys. Chem. 104 407-15 PubMed GONUTS page
- ↑ Thorsness, PE & Koshland, DE Jr (1987) Inactivation of isocitrate dehydrogenase by phosphorylation is mediated by the negative charge of the phosphate. J. Biol. Chem. 262 10422-5 PubMed GONUTS page
- ↑ Burke, WF et al. (1974) NADP+-specific isocitrate dehydrogenase of Escherichia coli. II. Subunit structure. Biochim. Biophys. Acta 351 333-40 PubMed GONUTS page
- ↑ Burke, WF et al. (1973) Crystallization of NADP-specific isocitrate dehydrogenase. Science 181 59-60 PubMed GONUTS page
- ↑ Wolfe, AJ (2005) The acetate switch. Microbiol. Mol. Biol. Rev. 69 12-50 PubMed GONUTS page
Category:
a
h
n
o
p
r
