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Category:Team The Microbial Produced Beverages

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SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesNEIGO:Q5G2Q5Wengerts, Team The Microbial Produced Beverages2012-04-14 13:42:46 CDTGO:0003924 GTPase activity (F)PMID:7592800ECO:0000314 direct assay evidence used in manual assertion

Table 2 shows that PilA specifically hydrolyzes GTP

challenge
requireschangesCORDI:ODHIWengerts, Team The Microbial Produced Beverages2012-04-14 12:56:55 CDTGO:0018545 NAD(P)H nitroreductase activity (F)PMID:19930647ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 shows a reduction in nitroreductase activity in mutant phenotypes linked to alterations in nsfB

challenge
requireschangesPASMU:GSHABWengerts, Team The Microbial Produced Beverages2012-04-14 08:40:22 CDTGO:0004357 glutamate-cysteine ligase activity (F)PMID:16339152ECO:0000314 direct assay evidence used in manual assertion

Table 2 shows an enzyme assay used in order to demonstrate Glutamate-cysteine ligase formation from GshF

challenge
requireschangesBORBR:Q7TTE5Ganesani, Team The Microbial Produced Beverages2012-04-13 16:58:23 CDTGO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides (F)PMID:22214383ECO:0000314 direct assay evidence used in manual assertion

Fig. 2 shows maleamate hydrolysis activity

challenge
acceptableHUMAN:S39A4Ganesani, Team The Microbial Produced Beverages2012-04-12 21:43:15 CDTGO:0005385 zinc ion transmembrane transporter activity (F)PMID:22242765ECO:0000314 direct assay evidence used in manual assertion

Fig. 2A: Frog oocytes injected with human ZIP4 mRNA showed significant zinc ion uptake activity compared to a negative control.

challenge
requireschangesVIBPA:Q87J05Wengerts, Team The Microbial Produced Beverages2012-04-12 16:52:41 CDTGO:0004445 inositol-polyphosphate 5-phosphatase activity (F)PMID:20724587ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 shows that the mutant phenotype was unable to hydrolyze phosphate off phosphatidylinositol 4,5-bisphosphate

challenge
requireschangesSTRAD:Q53738Wengerts, Team The Microbial Produced Beverages2012-04-12 16:33:00 CDTGO:0008828 dATP pyrophosphohydrolase activity (F)PMID:10438762ECO:0000314 direct assay evidence used in manual assertion

Figure 3 shows an enzyme assay of 3′-amino-3′-dATP pyrophosphohydrolase activity by pur7

challenge
requireschangesARATH:SQD1Wengerts, Team The Microbial Produced Beverages2012-04-12 11:43:28 CDTGO:0046506 UDPsulfoquinovose synthase activity (F)PMID:11960029ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 shows a mutation in which no sulfolipid production was detected.

challenge
requireschangesWOLSP:FTSZWengerts, Team The Microbial Produced Beverages2012-04-11 23:31:43 CDTGO:0003924 GTPase activity (F)PMID:22140592ECO:0000314 direct assay evidence used in manual assertion

Figure 3 shows an enzyme assay for the GTPase activity of FtsZ

challenge
requireschangesPICAD:E7R969Ganesani, Team The Microbial Produced Beverages2012-04-10 21:15:38 CDTGO:0004022 alcohol dehydrogenase (NAD) activity (Fig. 3C: ADH activity is significantly higher in the wild type strain than in the deletion mutant. )PMID:20635082IMP: Inferred from Mutant Phenotype
challenge
acceptableBACPU:F8SVM6Ganesani, Team The Microbial Produced Beverages2012-04-10 20:46:12 CDTGO:0036374 glutathione hydrolase activity (F)PMID:22305170ECO:0000314 direct assay evidence used in manual assertion

Fig. 6: E. coli transformed with GGTBP show gamma-glutamyltransferase activity using many different amino acids acceptors.

challenge
acceptableENTHI:Q58P26Ganesani, Team The Microbial Produced Beverages2012-04-10 20:14:10 CDTGO:0004586 ornithine decarboxylase activity (F)PMID:22389745ECO:0000315 mutant phenotype evidence used in manual assertion

Fig. 10: the four ODC mutants show significantly reduced enzyme activity compared to the wild type ODC.

challenge
acceptable9SPHN:Q0KJL5Ganesani, Team The Microbial Produced Beverages2012-04-10 15:57:13 CDTGO:0016787 hydrolase activity (F)PMID:22475079ECO:0000314 direct assay evidence used in manual assertion

Fig. 5: pH-rate profile for synthesis of PDC shows hydrolase activity of LigI.

challenge
requireschangesTHEAC:G3LGQ3Ganesani, Team The Microbial Produced Beverages2012-04-10 15:44:45 CDTGO:0050034 L-rhamnose 1-dehydrogenase activity (F)PMID:22481639ECO:0000314 direct assay evidence used in manual assertion

Table 1: enzyme assay shows L-rhamnose activity

challenge
requireschangesECOLI:RP54Ganesani, Team The Microbial Produced Beverages2012-04-10 11:14:44 CDTGO:0006355 regulation of transcription, DNA-dependent (P)PMID:21219458ECO:0000270 expression pattern evidence used in manual assertion

Fig. 4: The expression of motility genes fliA, flhC and flhD genes are reduced in rpoN mutants compared to wild type E. coli.

challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesECOLI:RPOSGanesani, Team The Microbial Produced Beverages2012-03-27 20:06:06 CDTGO:0045809 positive regulation of establishment of competence for transformation (P)PMID:22438941ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4A shows the transformation frequency was greater in the rpoS+ strain than in the rpoS- strain at similar optimal culture densities.

challenge
requireschangesVIBCH:HSLOWengerts, Team The Microbial Produced Beverages2012-03-27 12:17:01 CDTGO:0051082 unfolded protein binding (F)PMID:22296329ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3D. Results indicate EF-Tu was degraded faster in the hslO deletion strain than in wild-type cells. Hsp33 protects EF-Tu against protein

degradation by acting as a chaperone.

challenge

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