ECOLI:RP54

Species (Taxon ID)	Escherichia coli (strain K12). (83333)
Gene Name(s)	rpoN (synonyms: glnF, ntrA)
Protein Name(s)	RNA polymerase sigma-54 factor
External Links
UniProt	P24255
EMBL	M57612 D12938 Z27094 U12684 U18997 U00096 AP009048
PIR	I57054
RefSeq	NP_417669.1 YP_491387.1
ProteinModelPortal	P24255
SMR	P24255
DIP	DIP-10776N
IntAct	P24255
MINT	MINT-1224654
STRING	511145.b3202
PaxDb	P24255
PRIDE	P24255
EnsemblBacteria	AAC76234 BAE77246
GeneID	12930288 947714
KEGG	ecj:Y75_p3122 eco:b3202
PATRIC	32121824
EchoBASE	EB0891
EcoGene	EG10898
eggNOG	COG1508
HOGENOM	HOG000071905
InParanoid	P24255
KO	K03092
OMA	KVTRCIV
OrthoDB	EOG60CWN7
PhylomeDB	P24255
BioCyc	EcoCyc:RPON-MONOMER ECOL316407:JW3169-MONOMER MetaCyc:RPON-MONOMER
PRO	PR:P24255
Proteomes	UP000000318 UP000000625
Genevestigator	P24255
GO	GO:0003677 GO:0003899 GO:0003700 GO:0016987 GO:0006525 GO:0006352
InterPro	IPR000394 IPR007046 IPR007634
Pfam	PF00309 PF04963 PF04552
PIRSF	PIRSF000774
PRINTS	PR00045
TIGRFAMs	TIGR02395
PROSITE	PS00717 PS00718 PS50044

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
Contributes to	GO:0006355	regulation of transcription, DNA-dependent	PMID:21219458	ECO:0000270			P		Fig. 4: The expression of motility genes fliA, flhC and flhD genes are reduced in rpoN mutants compared to wild type E. coli.	complete CACAO 4278
part_of	GO:0032993	protein-DNA complex		ECO:0005667	site-directed mutagenesis phenotypic evidence used in manual assertion		C		Seeded From UniProt	complete
part_of	GO:0032993	protein-DNA complex		ECO:0005631	DNAse footprinting evidence used in manual assertion	RefSeq:NC_002516.2	C		Seeded From UniProt	complete
part_of	GO:0032993	protein-DNA complex		ECO:0001807	electrophoretic mobility shift assay evidence used in manual assertion		C		Seeded From UniProt	complete
enables	GO:0001216	DNA-binding transcription activator activity		ECO:0005667	site-directed mutagenesis phenotypic evidence used in manual assertion		F		Seeded From UniProt	complete
enables	GO:0001216	DNA-binding transcription activator activity		ECO:0005631	DNAse footprinting evidence used in manual assertion	RefSeq:NC_002516.2	F		Seeded From UniProt	complete
enables	GO:0001216	DNA-binding transcription activator activity		ECO:0001807	electrophoretic mobility shift assay evidence used in manual assertion		F		Seeded From UniProt	complete
enables	GO:0000976	transcription regulatory region sequence-specific DNA binding		ECO:0005667	site-directed mutagenesis phenotypic evidence used in manual assertion		F		Seeded From UniProt	complete
enables	GO:0000976	transcription regulatory region sequence-specific DNA binding		ECO:0005631	DNAse footprinting evidence used in manual assertion	RefSeq:NC_002516.2	F		Seeded From UniProt	complete
enables	GO:0000976	transcription regulatory region sequence-specific DNA binding		ECO:0001807	electrophoretic mobility shift assay evidence used in manual assertion		F		Seeded From UniProt	complete
involved_in	GO:0045893	positive regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0001216	P		Seeded From UniProt	complete
involved_in	GO:0045893	positive regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0001216	P		Seeded From UniProt	complete
involved_in	GO:0045893	positive regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0001216	P		Seeded From UniProt	complete
involved_in	GO:0045893	positive regulation of transcription, DNA-templated	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0001216	P		Seeded From UniProt	complete
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
enables	GO:0001216	DNA-binding transcription activator activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000394	F		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR007046	F		Seeded From UniProt	complete
involved_in	GO:0006352	DNA-templated transcription, initiation	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR007046	P		Seeded From UniProt	complete
enables	GO:0016987	sigma factor activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000394	F		Seeded From UniProt	complete
enables	GO:0016779	nucleotidyltransferase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0548	F		Seeded From UniProt	complete
enables	GO:0016740	transferase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0808	F		Seeded From UniProt	complete
involved_in	GO:0006525	arginine metabolic process	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0056	P		Seeded From UniProt	complete
enables	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0240	F		Seeded From UniProt	complete
enables	GO:0016987	sigma factor activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0731	F		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F		Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0731	P		Seeded From UniProt	complete
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