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ECOLI:RPOS
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | rpoS (ECO:0000255 with HAMAP-Rule:MF_00959) (synonyms: appR, katF, nur, otsX, sigS) | |
| Protein Name(s) | RNA polymerase sigma factor RpoS (ECO:0000255 with HAMAP-Rule:MF_00959)
Sigma S (ECO:0000255 with HAMAP-Rule:MF_00959) Sigma-38 (ECO:0000255 with HAMAP-Rule:MF_00959) | |
| External Links | ||
| UniProt | P13445 | |
| EMBL | X16400 D13548 Z14969 U29579 U00096 AP009048 D17549 L07869 | |
| PIR | A65055 | |
| RefSeq | NP_417221.1 YP_490950.1 | |
| ProteinModelPortal | P13445 | |
| SMR | P13445 | |
| DIP | DIP-10777N | |
| IntAct | P13445 | |
| MINT | MINT-1228474 | |
| STRING | 511145.b2741 | |
| PaxDb | P13445 | |
| PRIDE | P13445 | |
| EnsemblBacteria | AAC75783 BAE76818 | |
| GeneID | 12933280 947210 | |
| KEGG | ecj:Y75_p2679 eco:b2741 | |
| PATRIC | 32120886 | |
| EchoBASE | EB0505 | |
| EcoGene | EG10510 | |
| eggNOG | COG0568 | |
| HOGENOM | HOG000270273 | |
| InParanoid | P13445 | |
| KO | K03087 | |
| OMA | NDPISWY | |
| OrthoDB | EOG6XHC70 | |
| PhylomeDB | P13445 | |
| BioCyc | EcoCyc:RPOS-MONOMER ECOL316407:JW5437-MONOMER MetaCyc:RPOS-MONOMER | |
| PRO | PR:P13445 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P13445 | |
| GO | GO:0005737 GO:0001000 GO:0003677 GO:0003700 GO:0016987 GO:0006950 GO:0001123 | |
| Gene3D | 1.10.10.10 | |
| HAMAP | MF_00959 | |
| InterPro | IPR014284 IPR000943 IPR009042 IPR007627 IPR007624 IPR007630 IPR013325 IPR013324 IPR012761 IPR011991 | |
| Pfam | PF00140 PF04542 PF04539 PF04545 | |
| PRINTS | PR00046 | |
| SUPFAM | SSF88659 SSF88946 | |
| TIGRFAMs | TIGR02394 TIGR02937 | |
| PROSITE | PS00715 PS00716 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0001123 |
transcription initiation from bacterial-type RNA polymerase promoter |
ECO:0000314 |
P |
Table 1 shows that transcription of several genes is initiated by RpoS in the absence of any other sigma factor. |
complete | |||||
|
enables |
GO:0016987 |
sigma factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0001123 |
transcription initiation from bacterial-type RNA polymerase promoter |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0001000 |
bacterial-type RNA polymerase core enzyme binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:2000142 |
regulation of DNA-templated transcription, initiation |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0016987 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:2000142 |
regulation of DNA-templated transcription, initiation |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0016987 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:2000142 |
regulation of DNA-templated transcription, initiation |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0016987 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:2000142 |
regulation of DNA-templated transcription, initiation |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0016987 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000943 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006352 |
DNA-templated transcription, initiation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000943 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000943 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016987 |
sigma factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184394 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0010468 |
regulation of gene expression |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184394 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0001123 |
transcription initiation from bacterial-type RNA polymerase promoter |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184394 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184394 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016987 |
sigma factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184394 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016987 |
sigma factor activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
Contributes to |
GO:0045809 |
positive regulation of establishment of competence for transformation |
ECO:0000315 |
P |
Figure 4A shows the transformation frequency was greater in the rpoS+ strain than in the rpoS- strain at similar optimal culture densities. |
complete | ||||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Maciag, A et al. (2011) In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements. Nucleic Acids Res. 39 5338-55 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Nguyen, LH et al. (1993) In vitro functional characterization of overproduced Escherichia coli katF/rpoS gene product. Biochemistry 32 11112-7 PubMed GONUTS page
- ↑ Mandel, MJ & Silhavy, TJ (2005) Starvation for different nutrients in Escherichia coli results in differential modulation of RpoS levels and stability. J. Bacteriol. 187 434-42 PubMed GONUTS page
- ↑ Zhang, Y et al. (2012) RpoS regulates a novel type of plasmid DNA transfer in Escherichia coli. PLoS ONE 7 e33514 PubMed GONUTS page
