User:Shasan

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
unacceptable	LAMBD:GT	2016-04-20 09:15:49 CDT	GO:0098003 viral tail assembly (P)	PMID:23911548	ECO:0000314 direct assay evidence used in manual assertion	The paper shows through Figure 1 and Figure 4 that gpG and gpGT combine to together to chaperone the tail assembly	challenge
updatedbyinstructor	BPSP1:DUHM	2016-04-20 09:23:58 CDT	GO:0016742 hydroxymethyl-, formyl- and related transferase activity (F)	PMID:8527927	ECO:0000314 direct assay evidence used in manual assertion	Table 2 shows that deoxyuridylate hydroxymethylase catalyzes the same reaction as L. Casei TS using reactants such as CH2H4 folate and dUMP as well as other reactants in order to yield hmdUMP and H4 Folate.	challenge
unacceptable	LAMBD:STF	2016-04-20 09:26:50 CDT	GO:0019062 virion attachment to host cell (P)	PMID:10629200	ECO:0000314 direct assay evidence used in manual assertion	Figure 4 shows that the when the Tail Fiber Protein in Phage Lambda was inhibited, binding to LamB, the receptor at the surface of Escherichia coli K-12, was greatly reduced.	challenge
unacceptable	LAMBD:FI	2016-04-21 16:04:14 CDT	GO:0019072 viral genome packaging (P)	PMID:9220002	ECO:0000315 mutant phenotype evidence used in manual assertion	Lambda FI mutants were found to be unable to package DNA efficiently, and the cell had to instead use high concentrations of terminase in order to package the DNA as shown by Figure 7.	challenge
acceptable	BPT4:DMA	2016-04-25 09:42:36 CDT	GO:0032259 methylation (P)	PMID:2510127	ECO:0000315 mutant phenotype evidence used in manual assertion	Table 1 shows that the mutant phenotype of T4 with a different amino acid at residue 126 had higher methylation rates of different amino acids, due to relaxation in sequence specificity caused by the mutation.	challenge
acceptable	BPT4:DPOL	2016-04-25 15:15:47 CDT	GO:0008408 3'-5' exonuclease activity (F)	PMID:15037066	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 4 and Figure 5 show that the mutant phenotype of T4 that is lacking exonuclease has altered DNA polymerase activity. The wild type T4 used the proof reading exonuclease to stop at lesions in the DNA, whereas the mutant phentotype DNA polymerase bypassed the lesions due to lack of exonuclease.	challenge
updatedbyinstructor	LAMBD:TIPJ	2016-05-04 15:45:33 CDT	GO:0046813 receptor-mediated virion attachment to host cell (P)	PMID:10629200	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 4 shows that the when the Tail Fiber Protein in Phage Lambda was inhibited, binding to LamB, the receptor at the surface of Escherichia coli K-12, was greatly reduced.	challenge

acceptable:2
unacceptable:3
requires_changes:0
flagged:0

Annotations challenged by Shasan

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
unacceptable	Heatheca, Team ContaminatorZ	9CAUD:A0A024B0X2	GO:0098020 - obsolete virus tail, minor subunit (C)	PMID:22923442	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 5
unacceptable	Hoang5, Team Purple A	9CAUD:A0A0K2CZX3	GO:0009186 - deoxyribonucleoside diphosphate metabolic process (P)	PMID:11875520	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 1
unacceptable	Mnguy1, Team Blue B	9BACI:A0A0J8FEV2	GO:0016301 - kinase activity (BlastP result showed sequence alignment had a 41% identity and an e value of 5E-58.)	PMID:11292795	ISS: Inferred from Sequence Similarity UniProtKB:D5NZZ3	challenge	C: 2
unacceptable	Mnguy1, Team Blue B	9CAUD:A0A0K2CZZ1	GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity (F)	PMID:7588765	ECO:0000250 sequence similarity evidence used in manual assertion	challenge	C: 6
unacceptable	JamesMcDermott, Team T7	BPT4:GLRX	GO:0015035 - protein-disulfide reductase activity (F)	PMID:3735493	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 1
unacceptable	RacheleBonasera, Team T1	BPPH2:SSB	GO:0003697 - single-stranded DNA binding (F)	PMID:6809534	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 3

0 annotations fixed by Shasan

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