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DROME:TIM

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Species (Taxon ID) Drosophila melanogaster (Fruit fly). (7227)
Gene Name(s) tim
Protein Name(s) Protein timeless
External Links
UniProt P49021
EMBL U37018
AF032401
AF032400
AE014134
AE014134
AE014134
AE014134
AE014134
AE014134
AE014134
AE014134
AE014134
Y09930
Y09931
Y09932
Y09933
Y09934
Y09935
AY058278
BT001424
BT024951
BT099999
AF038501
PIR A57655
RefSeq NP_001014463.2
NP_001033872.2
NP_001137780.2
NP_001137781.2
NP_001188686.2
NP_722912.3
NP_722913.3
NP_722914.3
UniGene Dm.2663
BioGrid 59781
DIP DIP-29425N
MINT MINT-344208
EnsemblMetazoa FBtr0333253
FBtr0333254
FBtr0333255
FBtr0333258
FBtr0333259
GeneID 33571
KEGG dme:Dmel_CG3234
UCSC CG3234-RA
CTD 107698
FlyBase FBgn0014396
eggNOG NOG257888
GeneTree ENSGT00390000015124
InParanoid P49021
KO K12074
OMA LHIPETH
OrthoDB EOG7SXW2F
GenomeRNAi 33571
NextBio 784249
Proteomes UP000000803
Bgee P49021
ExpressionAtlas P49021
GO GO:0005737
GO:0005634
GO:0048471
GO:0043234
GO:0046982
GO:0008134
GO:0071482
GO:0048512
GO:0007623
GO:0060086
GO:0007620
GO:0008062
GO:0009649
GO:0045475
GO:0007617
GO:0046957
GO:0000122
GO:2000678
GO:0009648
GO:0006606
GO:0042749
GO:0045187
GO:0042306
GO:0007622
GO:0030431
InterPro IPR006906
Pfam PF04821

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0050764

regulation of phagocytosis

PMID:22253593[1]

ECO:0000315

P

Figure 5: Tim mutant flies do not express increased phagocytosis during circadian cycles when exposed to S. aureus

complete
CACAO 6721

GO:0050766

positive regulation of phagocytosis

PMID:22253593[1]

ECO:0000315

P

Figure 5: Tim mutant flies do not express increased phagocytosis during circadian cycles when exposed to S. aureus

complete
CACAO 7035

involved_in

GO:0050766

positive regulation of phagocytosis

PMID:22253593[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0050764

regulation of phagocytosis

PMID:22253593[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048478

replication fork protection

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000533813
PomBase:SPBC216.06c
SGD:S000005217

P

Seeded From UniProt

complete

involved_in

GO:0043111

replication fork arrest

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000533813
PomBase:SPBC216.06c
SGD:S000005217

P

Seeded From UniProt

complete

part_of

GO:0031298

replication fork protection complex

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000533813
SGD:S000005217

C

Seeded From UniProt

complete

involved_in

GO:0009649

entrainment of circadian clock

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0014396
FB:FBgn0038118
PANTHER:PTN000533816

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000533813
SGD:S000005217

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0014396
MGI:MGI:1321393
PANTHER:PTN000533813
PomBase:SPBC216.06c
RGD:620939
SGD:S000005217
UniProtKB:Q9UNS1
WB:WBGene00006571

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000533813
PomBase:SPBC216.06c

F

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000533813
PomBase:SPBC216.06c
UniProtKB:Q9UNS1

C

Seeded From UniProt

complete

involved_in

GO:0000076

DNA replication checkpoint

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000533813
SGD:S000005217

P

Seeded From UniProt

complete

involved_in

GO:0003053

circadian regulation of heart rate

PMID:25766238[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009649

entrainment of circadian clock

PMID:25165772[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045187

regulation of circadian sleep/wake cycle, sleep

PMID:25148297[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060086

circadian temperature homeostasis

PMID:22981774[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0046957

negative phototaxis

PMID:19285485[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:17369364[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:17369364[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0009648

photoperiodism

PMID:17600215[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045475

locomotor rhythm

PMID:17068124[10]

ECO:0000316

genetic interaction evidence used in manual assertion

FB:FBgn0031652

P

Seeded From UniProt

complete

involved_in

GO:0042749

regulation of circadian sleep/wake cycle

PMID:16938867[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16410523[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:16410523[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0046982

protein heterodimerization activity

PMID:11178250[13]

ECO:0000303

author statement without traceable support used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0007620

copulation

PMID:15324667[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12944510[15]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:12944510[15]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:12015613[16]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:12015613[16]

ECO:0000303

author statement without traceable support used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0006606

protein import into nucleus

PMID:12015613[16]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12015613[16]

ECO:0000303

author statement without traceable support used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0045187

regulation of circadian sleep/wake cycle, sleep

PMID:12015603[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030431

sleep

PMID:11715043[18]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0008062

eclosion rhythm

PMID:11715043[18]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045475

locomotor rhythm

PMID:11715043[18]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007623

circadian rhythm

PMID:11715043[18]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007617

mating behavior

PMID:11470898[19]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048512

circadian behavior

PMID:11333398[20]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:2000678

negative regulation of transcription regulatory region DNA binding

PMID:10409723[21]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0046982

protein heterodimerization activity

PMID:10409723[21]

ECO:0000353

physical interaction evidence used in manual assertion

FB:FBgn0023076

F

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

PMID:10409723[21]

ECO:0000353

physical interaction evidence used in manual assertion

FB:FBgn0023076

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:10409723[21]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:10417378[22]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0032991

protein-containing complex

PMID:10417378[22]

ECO:0000353

physical interaction evidence used in manual assertion

FB:FBgn0025680

C

Seeded From UniProt

complete

involved_in

GO:0071482

cellular response to light stimulus

PMID:9697866[23]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:27489346[24]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:27489346[24]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0007623

circadian rhythm

Reactome:R-DME-432626
PMID:11178250[13]
PMID:15312644[25]
PMID:12154068[26]
PMID:12490253[27]
PMID:12015613[16]

ECO:0000304

author statement supported by traceable reference used in manual assertion






P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

Reactome:R-DME-538832
Reactome:R-DME-538824
Reactome:R-DME-538822
Reactome:R-DME-432647
Reactome:R-DME-432642
Reactome:R-DME-432590
Reactome:R-DME-432535
Reactome:R-DME-432533
Reactome:R-DME-432507
Reactome:R-DME-432464
Reactome:R-DME-432427
Reactome:R-DME-432426
Reactome:R-DME-432401

ECO:0000304

author statement supported by traceable reference used in manual assertion













C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-DME-538904
Reactome:R-DME-538900
Reactome:R-DME-538891
Reactome:R-DME-432642
Reactome:R-DME-432527
Reactome:R-DME-432521
Reactome:R-DME-432513
Reactome:R-DME-432424
Reactome:R-DME-432371

ECO:0000304

author statement supported by traceable reference used in manual assertion









C

Seeded From UniProt

complete

involved_in

GO:0042306

regulation of protein import into nucleus

PMID:11178250[13]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009649

entrainment of circadian clock

PMID:11178250[13]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:11178250[13]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0046982

protein heterodimerization activity

PMID:15312644[25]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0045187

regulation of circadian sleep/wake cycle, sleep

PMID:12486704[28]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0008062

eclosion rhythm

PMID:12486701[29]
PMID:12111533[30]

ECO:0000304

author statement supported by traceable reference used in manual assertion


P

Seeded From UniProt

complete

involved_in

GO:0007622

rhythmic behavior

PMID:12486701[29]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12486701[29]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963

C

Seeded From UniProt

complete

involved_in

GO:0048511

rhythmic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0090

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0198

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 Stone, EF et al. (2012) The circadian clock protein timeless regulates phagocytosis of bacteria in Drosophila. PLoS Pathog. 8 e1002445 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  3. Gill, S et al. (2015) Time-restricted feeding attenuates age-related cardiac decline in Drosophila. Science 347 1265-9 PubMed GONUTS page
  4. Goda, T et al. (2014) Temperature-dependent resetting of the molecular circadian oscillator in Drosophila. Proc. Biol. Sci. 281 PubMed GONUTS page
  5. Liu, Z & Zhao, Z (2014) Effects of light interruption on sleep and viability of Drosophila melanogaster. PLoS ONE 9 e105678 PubMed GONUTS page
  6. Kaneko, H et al. (2012) Circadian rhythm of temperature preference and its neural control in Drosophila. Curr. Biol. 22 1851-7 PubMed GONUTS page
  7. Gong, Z (2009) Behavioral dissection of Drosophila larval phototaxis. Biochem. Biophys. Res. Commun. 382 395-9 PubMed GONUTS page
  8. 8.0 8.1 Fernández, MP et al. (2007) Impaired clock output by altered connectivity in the circadian network. Proc. Natl. Acad. Sci. U.S.A. 104 5650-5 PubMed GONUTS page
  9. Tauber, E et al. (2007) Natural selection favors a newly derived timeless allele in Drosophila melanogaster. Science 316 1895-8 PubMed GONUTS page
  10. Peschel, N et al. (2006) Veela defines a molecular link between Cryptochrome and Timeless in the light-input pathway to Drosophila's circadian clock. Proc. Natl. Acad. Sci. U.S.A. 103 17313-8 PubMed GONUTS page
  11. Koh, K et al. (2006) A Drosophila model for age-associated changes in sleep:wake cycles. Proc. Natl. Acad. Sci. U.S.A. 103 13843-7 PubMed GONUTS page
  12. 12.0 12.1 Meyer, P et al. (2006) PER-TIM interactions in living Drosophila cells: an interval timer for the circadian clock. Science 311 226-9 PubMed GONUTS page
  13. 13.0 13.1 13.2 13.3 13.4 Hardin, PE (2000) From biological clock to biological rhythms. Genome Biol. 1 REVIEWS1023 PubMed GONUTS page
  14. Beaver, LM & Giebultowicz, JM (2004) Regulation of copulation duration by period and timeless in Drosophila melanogaster. Curr. Biol. 14 1492-7 PubMed GONUTS page
  15. 15.0 15.1 Ashmore, LJ et al. (2003) Novel insights into the regulation of the timeless protein. J. Neurosci. 23 7810-9 PubMed GONUTS page
  16. 16.0 16.1 16.2 16.3 16.4 Panda, S et al. (2002) Circadian rhythms from flies to human. Nature 417 329-35 PubMed GONUTS page
  17. Shaw, PJ et al. (2002) Stress response genes protect against lethal effects of sleep deprivation in Drosophila. Nature 417 287-91 PubMed GONUTS page
  18. 18.0 18.1 18.2 18.3 Sokolowski, MB (2001) Drosophila: genetics meets behaviour. Nat. Rev. Genet. 2 879-90 PubMed GONUTS page
  19. Sakai, T & Ishida, N (2001) Circadian rhythms of female mating activity governed by clock genes in Drosophila. Proc. Natl. Acad. Sci. U.S.A. 98 9221-5 PubMed GONUTS page
  20. Wang, GK et al. (2001) Regulation of the cycling of timeless (tim) RNA. J. Neurobiol. 47 161-75 PubMed GONUTS page
  21. 21.0 21.1 21.2 21.3 Lee, C et al. (1999) PER and TIM inhibit the DNA binding activity of a Drosophila CLOCK-CYC/dBMAL1 heterodimer without disrupting formation of the heterodimer: a basis for circadian transcription. Mol. Cell. Biol. 19 5316-25 PubMed GONUTS page
  22. 22.0 22.1 Ceriani, MF et al. (1999) Light-dependent sequestration of TIMELESS by CRYPTOCHROME. Science 285 553-6 PubMed GONUTS page
  23. Suri, V et al. (1998) Evidence that the TIM light response is relevant to light-induced phase shifts in Drosophila melanogaster. Neuron 21 225-34 PubMed GONUTS page
  24. 24.0 24.1 Lee, E et al. (2016) Pacemaker-neuron-dependent disturbance of the molecular clockwork by a Drosophila CLOCK mutant homologous to the mouse Clock mutation. Proc. Natl. Acad. Sci. U.S.A. 113 E4904-13 PubMed GONUTS page
  25. 25.0 25.1 Emery, P & Reppert, SM (2004) A rhythmic Ror. Neuron 43 443-6 PubMed GONUTS page
  26. Glossop, NR & Hardin, PE (2002) Central and peripheral circadian oscillator mechanisms in flies and mammals. J. Cell. Sci. 115 3369-77 PubMed GONUTS page
  27. Rothenfluh, A & Heberlein, U (2002) Drugs, flies, and videotape: the effects of ethanol and cocaine on Drosophila locomotion. Curr. Opin. Neurobiol. 12 639-45 PubMed GONUTS page
  28. Shaw, PJ & Franken, P (2003) Perchance to dream: solving the mystery of sleep through genetic analysis. J. Neurobiol. 54 179-202 PubMed GONUTS page
  29. 29.0 29.1 29.2 Stanewsky, R (2003) Genetic analysis of the circadian system in Drosophila melanogaster and mammals. J. Neurobiol. 54 111-47 PubMed GONUTS page
  30. Stanewsky, R (2002) Clock mechanisms in Drosophila. Cell Tissue Res. 309 11-26 PubMed GONUTS page