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DROME:TIM
Contents
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0050764 |
regulation of phagocytosis |
ECO:0000315 |
P |
Figure 5: Tim mutant flies do not express increased phagocytosis during circadian cycles when exposed to S. aureus |
complete | |||||
GO:0050766 |
positive regulation of phagocytosis |
ECO:0000315 |
P |
Figure 5: Tim mutant flies do not express increased phagocytosis during circadian cycles when exposed to S. aureus |
complete | |||||
involved_in |
GO:0050766 |
positive regulation of phagocytosis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0050764 |
regulation of phagocytosis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048478 |
replication fork protection |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000533813 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043111 |
replication fork arrest |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000533813 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0031298 |
replication fork protection complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000533813 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009649 |
entrainment of circadian clock |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0014396 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000533813 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0014396 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000533813 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000533813 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000076 |
DNA replication checkpoint |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000533813 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0003053 |
circadian regulation of heart rate |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009649 |
entrainment of circadian clock |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045187 |
regulation of circadian sleep/wake cycle, sleep |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0060086 |
circadian temperature homeostasis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0046957 |
negative phototaxis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009648 |
photoperiodism |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045475 |
locomotor rhythm |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
FB:FBgn0031652 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0042749 |
regulation of circadian sleep/wake cycle |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0046982 |
protein heterodimerization activity |
ECO:0000303 |
author statement without traceable support used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007620 |
copulation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000303 |
author statement without traceable support used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006606 |
protein import into nucleus |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000303 |
author statement without traceable support used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045187 |
regulation of circadian sleep/wake cycle, sleep |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0030431 |
sleep |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0008062 |
eclosion rhythm |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045475 |
locomotor rhythm |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007623 |
circadian rhythm |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007617 |
mating behavior |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048512 |
circadian behavior |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000678 |
negative regulation of transcription regulatory region DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046982 |
protein heterodimerization activity |
ECO:0000353 |
physical interaction evidence used in manual assertion |
FB:FBgn0023076 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0008134 |
transcription factor binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
FB:FBgn0023076 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032991 |
protein-containing complex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
FB:FBgn0025680 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071482 |
cellular response to light stimulus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007623 |
circadian rhythm |
Reactome:R-DME-432626 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
P |
Seeded From UniProt |
complete | |
part_of |
GO:0005829 |
cytosol |
Reactome:R-DME-538832 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-DME-538904 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
involved_in |
GO:0042306 |
regulation of protein import into nucleus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009649 |
entrainment of circadian clock |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046982 |
protein heterodimerization activity |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045187 |
regulation of circadian sleep/wake cycle, sleep |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0008062 |
eclosion rhythm |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007622 |
rhythmic behavior |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048511 |
rhythmic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0048471 |
perinuclear region of cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Stone, EF et al. (2012) The circadian clock protein timeless regulates phagocytosis of bacteria in Drosophila. PLoS Pathog. 8 e1002445 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Gill, S et al. (2015) Time-restricted feeding attenuates age-related cardiac decline in Drosophila. Science 347 1265-9 PubMed GONUTS page
- ↑ Goda, T et al. (2014) Temperature-dependent resetting of the molecular circadian oscillator in Drosophila. Proc. Biol. Sci. 281 PubMed GONUTS page
- ↑ Liu, Z & Zhao, Z (2014) Effects of light interruption on sleep and viability of Drosophila melanogaster. PLoS ONE 9 e105678 PubMed GONUTS page
- ↑ Kaneko, H et al. (2012) Circadian rhythm of temperature preference and its neural control in Drosophila. Curr. Biol. 22 1851-7 PubMed GONUTS page
- ↑ Gong, Z (2009) Behavioral dissection of Drosophila larval phototaxis. Biochem. Biophys. Res. Commun. 382 395-9 PubMed GONUTS page
- ↑ 8.0 8.1 Fernández, MP et al. (2007) Impaired clock output by altered connectivity in the circadian network. Proc. Natl. Acad. Sci. U.S.A. 104 5650-5 PubMed GONUTS page
- ↑ Tauber, E et al. (2007) Natural selection favors a newly derived timeless allele in Drosophila melanogaster. Science 316 1895-8 PubMed GONUTS page
- ↑ Peschel, N et al. (2006) Veela defines a molecular link between Cryptochrome and Timeless in the light-input pathway to Drosophila's circadian clock. Proc. Natl. Acad. Sci. U.S.A. 103 17313-8 PubMed GONUTS page
- ↑ Koh, K et al. (2006) A Drosophila model for age-associated changes in sleep:wake cycles. Proc. Natl. Acad. Sci. U.S.A. 103 13843-7 PubMed GONUTS page
- ↑ 12.0 12.1 Meyer, P et al. (2006) PER-TIM interactions in living Drosophila cells: an interval timer for the circadian clock. Science 311 226-9 PubMed GONUTS page
- ↑ 13.0 13.1 13.2 13.3 13.4 Hardin, PE (2000) From biological clock to biological rhythms. Genome Biol. 1 REVIEWS1023 PubMed GONUTS page
- ↑ Beaver, LM & Giebultowicz, JM (2004) Regulation of copulation duration by period and timeless in Drosophila melanogaster. Curr. Biol. 14 1492-7 PubMed GONUTS page
- ↑ 15.0 15.1 Ashmore, LJ et al. (2003) Novel insights into the regulation of the timeless protein. J. Neurosci. 23 7810-9 PubMed GONUTS page
- ↑ 16.0 16.1 16.2 16.3 16.4 Panda, S et al. (2002) Circadian rhythms from flies to human. Nature 417 329-35 PubMed GONUTS page
- ↑ Shaw, PJ et al. (2002) Stress response genes protect against lethal effects of sleep deprivation in Drosophila. Nature 417 287-91 PubMed GONUTS page
- ↑ 18.0 18.1 18.2 18.3 Sokolowski, MB (2001) Drosophila: genetics meets behaviour. Nat. Rev. Genet. 2 879-90 PubMed GONUTS page
- ↑ Sakai, T & Ishida, N (2001) Circadian rhythms of female mating activity governed by clock genes in Drosophila. Proc. Natl. Acad. Sci. U.S.A. 98 9221-5 PubMed GONUTS page
- ↑ Wang, GK et al. (2001) Regulation of the cycling of timeless (tim) RNA. J. Neurobiol. 47 161-75 PubMed GONUTS page
- ↑ 21.0 21.1 21.2 21.3 Lee, C et al. (1999) PER and TIM inhibit the DNA binding activity of a Drosophila CLOCK-CYC/dBMAL1 heterodimer without disrupting formation of the heterodimer: a basis for circadian transcription. Mol. Cell. Biol. 19 5316-25 PubMed GONUTS page
- ↑ 22.0 22.1 Ceriani, MF et al. (1999) Light-dependent sequestration of TIMELESS by CRYPTOCHROME. Science 285 553-6 PubMed GONUTS page
- ↑ Suri, V et al. (1998) Evidence that the TIM light response is relevant to light-induced phase shifts in Drosophila melanogaster. Neuron 21 225-34 PubMed GONUTS page
- ↑ 24.0 24.1 Lee, E et al. (2016) Pacemaker-neuron-dependent disturbance of the molecular clockwork by a Drosophila CLOCK mutant homologous to the mouse Clock mutation. Proc. Natl. Acad. Sci. U.S.A. 113 E4904-13 PubMed GONUTS page
- ↑ 25.0 25.1 Emery, P & Reppert, SM (2004) A rhythmic Ror. Neuron 43 443-6 PubMed GONUTS page
- ↑ Glossop, NR & Hardin, PE (2002) Central and peripheral circadian oscillator mechanisms in flies and mammals. J. Cell. Sci. 115 3369-77 PubMed GONUTS page
- ↑ Rothenfluh, A & Heberlein, U (2002) Drugs, flies, and videotape: the effects of ethanol and cocaine on Drosophila locomotion. Curr. Opin. Neurobiol. 12 639-45 PubMed GONUTS page
- ↑ Shaw, PJ & Franken, P (2003) Perchance to dream: solving the mystery of sleep through genetic analysis. J. Neurobiol. 54 179-202 PubMed GONUTS page
- ↑ 29.0 29.1 29.2 Stanewsky, R (2003) Genetic analysis of the circadian system in Drosophila melanogaster and mammals. J. Neurobiol. 54 111-47 PubMed GONUTS page
- ↑ Stanewsky, R (2002) Clock mechanisms in Drosophila. Cell Tissue Res. 309 11-26 PubMed GONUTS page
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- GO:0050764 ! regulation of phagocytosis
- GO:0042306 ! regulation of protein import into nucleus
- GO:0045187 ! regulation of circadian sleep/wake cycle, sleep
- GO:0042749 ! regulation of circadian sleep/wake cycle
- GO:0031298 ! replication fork protection complex
- GO:0043111 ! replication fork arrest
- GO:0007622 ! rhythmic behavior
- GO:0048511 ! rhythmic process