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Category:Team Lappish Hag's Love Potion

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SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptablePSEAI:G8GSY7Napiera8, Team Lappish Hag's Love Potion2012-04-13 13:08:53 CDTGO:0003987 acetate-CoA ligase activity (F)PMID:11577146ECO:0000315 mutant phenotype evidence used in manual assertion

table 3 shows the specific activity of the ACS protein in various strains when grown on various carbon souces. Strain MS1 showed not ACS activity when grown on any carbon sources. When complemented with a plasmid carrying the acsA gene, ASC activity was detected in MS1

challenge
requireschangesDROME:Q9U470Belllesl, Team Lappish Hag's Love Potion2012-04-12 12:40:17 CDTGO:0008283 cell proliferation (P)PMID:22363644ECO:0000314 direct assay evidence used in manual assertion

Figure 1 shows cell proliferation in pten mutants to be within a statistically significant time as the positive control. Figure 2 shows the similarity in pten mutants compared to oncogenic cultures known for cell proliferation.

challenge
requireschangesCLOCL:Q53EH2Napiera8, Team Lappish Hag's Love Potion2012-04-11 10:35:34 CDTGO:0030245 cellulose catabolic process (P)PMID:16930544ECO:0000314 direct assay evidence used in manual assertion

Figure 1: BglA activity was detected when cellulose was provided as the sole carbon source. No activity detected when grown on other carbon sources.

challenge
acceptableCUPMC:SODMNapiera8, Team Lappish Hag's Love Potion2012-04-10 21:26:20 CDTGO:0004784 superoxide dismutase activity (F)PMID:12471500ECO:0000314 direct assay evidence used in manual assertion

Figure 4: ChrC was purified by affinity chromatography. The results of activity stain indicate ChrC is a SOD.

challenge
requireschangesDESVH:DCRANapiera8, Team Lappish Hag's Love Potion2012-04-10 12:28:59 CDTGO:0009454 aerotaxis (P)PMID:9202456ECO:0000315 mutant phenotype evidence used in manual assertion

figure 6: dcrA mutants show a decrease in viable cells when exposed to oxygen

figure 7: results of oxygen capillary experiment show that dcrA mutants do not migrate from oxygen source compared to wildtype cells.

challenge
acceptableALCBS:ALKB1Napiera8, Team Lappish Hag's Love Potion2012-04-10 12:04:57 CDTGO:0018685 alkane 1-monooxygenase activity (F)PMID:14871203ECO:0000315 mutant phenotype evidence used in manual assertion

figure 3 show growth rates of alkB1 mutants on different n-alkanes. the growth rate was lowered in alkB1 mutants grown on n-hexane, while not affected when grown on other alkanes. This shows that alkB1 is involved in the degradation of n-hexane, while other enzymes are involved in the degradation of longer chain alkanes.

challenge
requireschangesGEOSN:Q8GGK7Napiera8, Team Lappish Hag's Love Potion2012-04-10 11:19:50 CDTGO:0009055 electron carrier activity (F)PMID:12356333ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5 show the growth rate of both wild type and ppcA mutants when grown with acetate as an electron donor and both fumarate and iron(III) as electron acceptors. The growth rate of the mutant was decreased when Fe(III) was used as an electron acceptor. Combined with Table 3 which illustrates the reduction rates of several compounds in wild type an mutant suggests that ppcA is a carrier of electrons from acetate to iron(III) reductases.

challenge
requireschangesDROME:OR47BBelllesl, Team Lappish Hag's Love Potion2012-04-10 11:17:56 CDTGO:0007608 sensory perception of smell (P)PMID:22476771ECO:0000314 direct assay evidence used in manual assertion

Figure 2 demonstrates sociosexual interactions are olfactory mediated based on the activity data of MF, MM, and FF couples. Figure 3 reveals the decrease in SSI of Or47b-ablated flies. The SSI activity of males is shown to be dependent on olfactory senses according to Figure 4.

challenge
requireschangesGEOSK:D7AF17Napiera8, Team Lappish Hag's Love Potion2012-04-10 10:39:24 CDTGO:0016491 oxidoreductase activity (Figures 2 and 3 demonstrate the decreased iron(II) production iron(III)reduction in macA deletion mutants. )PMID:18616590IMP: Inferred from Mutant Phenotype
challenge
requireschangesRALME:CNRHNapiera8, Team Lappish Hag's Love Potion2012-04-09 21:05:37 CDTGO:0006352 transcription initiation, DNA-dependent (P)PMID:16158236ECO:0000314 direct assay evidence used in manual assertion

Figure 3 shows results of run off transcription assay. No transcription without cnrH. In the presence of cnrH transcription from cnrC and cnrY is activated.

challenge
acceptableCUPMC:CZCDNapiera8, Team Lappish Hag's Love Potion2012-04-09 20:26:59 CDTGO:0010312 detoxification of zinc ion (P)PMID:15516561ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1 shows complementation assay. E. coli with deleted zitB showed high zinc accumulation whereas E. coli with the deletion that were complemented with czcD from R. metallidurans showed lower levels of zinc accumulation.

challenge
requireschangesERWAM:Q9XB65Napiera8, Team Lappish Hag's Love Potion2012-04-09 18:19:13 CDTGO:0008237 metallopeptidase activity (F)PMID:10373365ECO:0000314 direct assay evidence used in manual assertion

Table 3 demonstrates homology with known metalloproteases from other bacteria.

Figure 4 confirms proteolytic activity of prtA in Erwinia by demonstrating inhibition by several common protease inhibitors.

challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesHUMAN:Q8N519Belllesl, Team Lappish Hag's Love Potion2012-04-01 16:01:20 CDTGO:0010467 gene expression (P)PMID:21980471ECO:0000314 direct assay evidence used in manual assertion

Figure 2 demonstrates the allelic expression of Lamin A and Lamin C genes and Figure 1 provides the primer sequences used in the TaqMan assays for quantification of LMNA A and C transcripts.

challenge
requireschangesPSEOL:ALKKNapiera8, Team Lappish Hag's Love Potion2012-03-27 19:47:47 CDTGO:0031956 medium-chain fatty acid-CoA ligase activity (F)PMID:1453953ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 8, complementation of E. coli acyl-CoA synthetase mutation by plasmid carrying alkK.

challenge

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