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Category:Team King of All Cosmos

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SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableAZOVI:ALGFGrandhis, Team King of All Cosmos2012-04-15 17:41:12 CDTGO:0051979 alginic acid acetylation (P)PMID:10352233ECO:0000315 mutant phenotype evidence used in manual assertion

Table 2: Strain AJ34 carrying the algF::ΩTc insertion in the non-polar orientation produced unacetylated alginate. Strain AJ21 carrying the algF::ΩTc mutation in the polar orientation did not produce alginate. Plasmid pRSA55 carrying the A. vinelandii algL-A region was transferred by conjugation to strain AJ34. This plasmid restored wild-type mucoid phenotype and alginate acetylation to AJ34 mutant.

challenge
requireschangesPSEPA:Q7WST1Grandhis, Team King of All Cosmos2012-04-15 17:03:06 CDTGO:0018487 vanillate O-demethylase (anaerobic) activity (F)PMID:15743951ECO:0000315 mutant phenotype evidence used in manual assertion

Fig. 6A: While the vanillate conversion rate of the cell extract of DKLM incubated with vanillate was strikingly reduced, DDAM (ligM and desA double mutant) cells no longer showed any such activity. These results indicated that only ligM and desA are involved in vanillate O demethylation.

challenge
requireschangesPSEPA:Q60FX1Grandhis, Team King of All Cosmos2012-04-15 16:21:25 CDTGO:0018487 vanillate O-demethylase (anaerobic) activity (F)PMID:15743951ECO:0000315 mutant phenotype evidence used in manual assertion

Fig. 6A: The vanillate conversion rate of the cell extract of DKLM (ligM mutant) incubated with vanillate was strikingly reduced. ligM plays a major role in the O demethylation of vanillate.

challenge
acceptablePSEAE:ALGCGrandhis, Team King of All Cosmos2012-04-14 16:57:42 CDTGO:0009243 O antigen biosynthetic process (P)PMID:7515870ECO:0000315 mutant phenotype evidence used in manual assertion

(Fig. 1A: The LPS from the algC mutants, PAO1 algC::tet and PAClR algC::tet did not produce the wildtype laddering pattern of smooth LPS. The laddering is because of O-antigen.)

Fig 1B: CONFIRMATION THAT LADDERING IS DUE TO EXPRESSION OF O-ANTIGENIC LPS: Polyclonal rabbit antisera raised to purified P. aeruginosa serotype 05 or serotype 03 LPS did not react to LPS recovered from the algC::tet mutant strains, while strong reactions occurred to LPS from the parental and complemented strains.

challenge
requireschangesPSEA8:B7V5F1Grandhis, Team King of All Cosmos2012-04-14 14:55:03 CDTGO:0006355 regulation of transcription, DNA-dependent (Table 1 & Fig. 2, lane 5 show reduced algD expression: 17-fold in the algR mutant FRD810. )PMID:7928961IMP: Inferred from Mutant Phenotype
challenge
acceptableAPIME:OPSUVWrigh376, Team King of All Cosmos2012-04-14 08:51:13 CDTGO:0009881 photoreceptor activity (F)PMID:9502802ECO:0000314 direct assay evidence used in manual assertion

Figure 6C shows that the gene-product of the cloned genes they are studying absorbs UV-light, which is evidence that the gene-product is the honey bee UV-opsin.

challenge
acceptablePSEAI:P77568Grandhis, Team King of All Cosmos2012-04-12 13:51:35 CDTGO:0043107 type IV pilus-dependent motility (P)PMID:8790418ECO:0000315 mutant phenotype evidence used in manual assertion

Fig. 3: MUTANT PHENOTYPE: Mutations in

fimS result in either complete loss or severe retardation of twitching motility.

Fig 4: ELISA ASSAY: fimS mutant

essentially lacks surface fimbriae as shown by ELISA, which is a sensitive quantitative assay.

challenge
requireschangesPSEA8:B7V5F1Grandhis, Team King of All Cosmos2012-04-12 13:45:58 CDTGO:0043107 type IV pilus-dependent motility (Fig. 3: MUTANT PHENOTYPE: Mutations in

algR result in either complete loss or severe retardation of twitching motility.

Fig 4: ELISA ASSAY: AlgR mutant

essentially lack surface fimbriae as shown by ELISA, which is a sensitive quantitative assay.)
PMID:8790418IMP: Inferred from Mutant Phenotype
challenge
acceptableDROME:OPS5Wrigh376, Team King of All Cosmos2012-04-12 11:52:24 CDTGO:0016028 rhabdomere (C)PMID:8982159ECO:0000314 direct assay evidence used in manual assertion

Figure 3E shows in detail that Rh5 protein is expressed in the rhabdomere of the fruit fly eye.

challenge
acceptablePIERA:Q401Q1Wrigh376, Team King of All Cosmos2012-04-10 11:53:18 CDTGO:0009881 photoreceptor activity (F)PMID:21124838ECO:0000314 direct assay evidence used in manual assertion

Figure 1C (small lower right box), shows the absorbance spectra of the gene product, when bound to the chromophore 11-cis retinal, before and after photoactivation with light.

challenge
acceptablePIERA:Q401Q0Wrigh376, Team King of All Cosmos2012-04-10 11:46:08 CDTGO:0009881 photoreceptor activity (F)PMID:21124838ECO:0000314 direct assay evidence used in manual assertion

Figure 1B, shows that the gene-product, when bound to 11-cis retinal, absorbs light, which induces a change to all trans-retinal and the resulting absorbance spectrum of the protein.

challenge
acceptableHUMAN:OPSGWrigh376, Team King of All Cosmos2012-04-10 11:13:06 CDTGO:0009881 photoreceptor activity (F)PMID:8185948ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4, shows the absorbance spectrum of the gene product and the spectra of common mutants that affect the protein's light absorbing capabilities.

challenge
acceptableHUMAN:OPSRWrigh376, Team King of All Cosmos2012-04-10 11:09:33 CDTGO:0009881 photoreceptor activity (F)PMID:8185948ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3, shows the absorbance spectra of the gene product and the resulting spectra that occur from mutations in the gene.

challenge
requireschangesPSEOC:HMGAWrigh376, Team King of All Cosmos2012-04-09 21:01:39 CDTGO:0008700 4-hydroxy-2-oxoglutarate aldolase activity (F)PMID:11826967ECO:0000314 direct assay evidence used in manual assertion

Figure 5 and Table 2 show that the gene-product of proA gene the group cloned and sequenced is of the same size and activity as the 4-hydroxy-2-oxoglutarate aldolase enzyme that was characterized in previous papers.

challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
updatedbyinstructorCAEEL:RHY1Grandhis, Team King of All Cosmos2012-03-29 12:35:52 CDTGO:1900038 negative regulation of cellular response to hypoxia (P)PMID:16980385ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 5: Confirms that rhy-1 inhibits the expression of HIF-1

target genes in a real-time RT-PCR assay monitoring the expression levels of two endogenous mRNAs, K10H10.2 and F22B5.4. Mutation of rhy-1 significantly increased the expression of both genes.

challenge
requireschangesSTAAE:ESXBGrandhis, Team King of All Cosmos2012-03-29 11:48:43 CDTGO:0009405 pathogenesis (P)PMID:15657139ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 5 indicates that mutations in the secretion of EsxB cause a 2- to

4-log reduction in the ability of these mutant staphylococci to establish abscesses in infected mice--EsxA and EsxB represent an important virulence strategy in S. aureus.

challenge

Pages in category "Team King of All Cosmos"

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