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Category:Team BPS1420

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SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
updatedbyinstructorYEAST:FRDATurmoaik, Team BPS14202012-04-15 14:09:31 CDTGO:0016226 iron-sulfur cluster assembly (P)PMID:12065597ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5 (A) and 5 (B). yfh1 deletion clearly has resulted decrease number of Fe/S protein maturation in mitochondria compared to the wildtype.

challenge
updatedbyinstructorYEAST:RCF1Turmoaik, Team BPS14202012-04-15 13:47:20 CDTGO:0097250 mitochondrial respiratory chain supercomplex assembly (P)PMID:22342701ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 (B) and 4(D). Dramatic lost of III2 and IV2 complex can be seen in the lanes of the rcf1 mutant when compared to the wildtype lanes.

challenge
updatedbyinstructorYEAST:COX4Turmoaik, Team BPS14202012-04-15 13:36:35 CDTGO:0033617 mitochondrial respiratory chain complex IV assembly (P)PMID:22342701ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2 (B). The lack of band in lane 14 and 16 compared to the WT bands at the specific high molecular weight of 230 and 440 kDa indicates the lack of complex IV in mutant cox4.

challenge
requireschanges?Vinodnov, Team BPS14202012-04-14 18:34:05 CDTGO:0090180 positive regulation of thiamine biosynthetic process (Figure 1 illustrates α-galactosidase activity in pAS2-PDC2 yeast cells and ecially when the cells were grown in low-thiamin medium.Indicating that Pdc2p serves as a transactivation activator in response to thiamin starvation.)PMID:19013460IDA: Inferred from Direct Assay
challenge
updatedbyinstructorYEAST:HST1Vinodnov, Team BPS14202012-04-14 18:07:17 CDTGO:0070623 regulation of thiamine biosynthetic process (P)PMID:20439498ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 7A illusterates an increase in intracellular thiamine levels in the mutant Hst1 representing that cellular thiamine homeostasis in yeast requires Hst1.

challenge
updatedbyinstructorYEAST:UMP1Turmoaik, Team BPS14202012-04-14 13:07:43 CDTGO:0090363 regulation of proteasome core complex assembly (P)PMID:21878652ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 (C). The blot of the gene ump1 mutant compared to the wild type blot, as long as the rest of the blots, indicate that the presence of ump1 is needed for regulation of core complex assembly due to the lack of regulatory particle and core particle bands.

challenge
updatedbyinstructorYEAST:UBP6Turmoaik, Team BPS14202012-04-14 12:25:41 CDTGO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process (P)PMID:21658604ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5(A) The immunoblot analysis indicates that the blot of Ubp6 mutant accumulates ubiquitylated proteins unlike the wild type cells.

Figure 4 (D) Double deletion of Ubp6 and hsm3 shows the most noticeable growth defect due to lack of proteasomal assembly.

challenge
requireschanges?Vinodnov, Team BPS14202012-04-13 23:14:00 CDTGO:0008283 cell proliferation (Figure 6 illustrates mutant embryos lacking Pes formed abnormal blastomeres inhibiting the embryos to proliferate past the early stages of development.)PMID:12237316IMP: Inferred from Mutant Phenotype
challenge
requireschanges?Vinodnov, Team BPS14202012-04-13 21:41:14 CDTGO:0007051 spindle organization (Figure 6C illustrates mitotic cells in Tcof1 knock-down cultures contained abnormal mitotic spindle and chromosome alignment. Figure 7D illustrates cells lacking Tcof1 showed abnormality in chromosome alignment.)PMID:22479190IDA: Inferred from Direct Assay
challenge
requireschanges?Vinodnov, Team BPS14202012-04-13 21:24:49 CDTGO:0007051 spindle organization (Figure 8B illustrates PLK1 inhibitor BI 2536 results in defects of mitotic spindle organization and a delay in mitotic progression.)PMID:22479190IDA: Inferred from Direct Assay
challenge
requireschanges?Vinodnov, Team BPS14202012-04-13 20:49:53 CDTGO:0043066 negative regulation of apoptotic process (Figure 1A illustrates that the number of cell with apotosis inducer NMDA were significantly reduced by APC. Figures 3B and 3F show APC reduces levels of apoptosis dependent protein p53 by half in NMDA-treated neurons.)PMID:14980205IDA: Inferred from Direct Assay
challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschanges?Vinodnov, Team BPS14202012-04-01 12:33:23 CDTGO:0006979 response to oxidative stress (Figure 1 showed Fibroblasts exposed to 6 hours of oxidants H2o2, paraquat , cadmium and hemin showed an increased regulation of Hmox1. Lanes 3 and 12 exposed to hemin and paraquat showed cells with strongest induction.)PMID:9380736IDA: Inferred from Direct Assay
challenge
requireschanges?Turmoaik, Team BPS14202012-04-01 11:28:28 CDTGO:0004347 glucose-6-phosphate isomerase activity (Table 1. Demonstrates the importance of the gene PGI1 for phosphoglucose isomerase activity. The quantity of the reactive activity increases by 7 folds due to the addition of the plasmid including the PGI1 gene to yeast lacking this specific gene. )PMID:3007940IEP: Inferred from Expression Pattern
challenge

Pages in category "Team BPS1420"

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