GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

Category:Team A-Squared

From GONUTS
Jump to: navigation, search
StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptableHELPX:C7F7V2UbbahAli, Team A-Squared2014-03-23 17:30:26 CDTGO:0009405 pathogenesis (P)PMID:16436379ECO:0000314 direct assay evidence used in manual assertion

toxin molecule that attaches to the surface and gets inserted into the cell where it accumulates and effects the normal trafficking of the cells resulting in the death of that cell

challenge
unacceptableHELPB:C7C0P1Edgar.linares, Team A-Squared2014-03-23 15:07:59 CDTGO:0016151 nickel cation binding (F)PMID:24363511ECO:0000255 match to sequence model evidence used in manual assertion

Fig. 3 Shows were NikR is located and it regulates Ni.

challenge
unacceptableHELHP:Q7VJL9Zgeeraerts, Team A-Squared2014-03-21 20:19:01 CDTGO:0006810 transport (P)PMID:19191900ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1 shows the genes used to identify RND efflux pumps in H. hepaticus which are highly homologous in other bacteria. Table 3 shows the minimal inhibitory concentration (MIC) of various compounds with wild-type and mutant HefA. The mutant HefA resulted in a significant drop in MIC for amoxicillin and bile acids. These data support that HefA is a multi-drug efflux pump which transports toxic compounds outside of the cell.

challenge
unacceptableHELP3:D7FE80ErikaMWehmhoff, Team A-Squared2014-03-21 10:29:08 CDTGO:0070062 extracellular vesicular exosome (C)PMID:20659286ECO:0000314 direct assay evidence used in manual assertion

Figure 4 demonstrates the presence of SabA and other proteins as major phospholipid components in H. pylori vesicles. Figure 6 demonstrates the presence of receptor-binding adhesins like SabA on the surface of H. pylori vesicles. Figure 7 shows the SabA adhesion–receptor specificity operating in the vesicle–tissue interaction.

challenge
unacceptableCAMJJ:PEB1CEmilyNorwig, Team A-Squared2014-03-18 11:26:36 CDTGO:0006810 transport (P)PMID:8360165ECO:0000314 direct assay evidence used in manual assertion

Fig. 7 shows southern hybridization of peb1A conversion; Fig. 8 shows PCR of peb1A fragment

challenge
unacceptableCAMJJ:PEB1CEmilyNorwig, Team A-Squared2014-03-02 22:56:57 CSTGO:0051706 physiological interaction between organisms (P)PMID:8360165ECO:0000314 direct assay evidence used in manual assertion

Figure 8 shows PCR of peb1A fragment of both campylobacter strains. It displays the importance of the conservation of the peb1A gene in C. jejuni.

challenge
unacceptableHELPX:Q9JP55Sarah.budde, Team A-Squared2014-03-02 10:34:52 CSTGO:0016337 cell-cell adhesion (P)PMID:8516329ECO:0000314 direct assay evidence used in manual assertion

Figure 4 shows the southern blot of the chromosomal DNA of a cytotoxic H. pylori strain and a non-cytotoxic strain of H. pylori.

challenge
unacceptableHELHP:Q7VJL9Zgeeraerts, Team A-Squared2014-03-01 16:21:35 CSTGO:0046677 response to antibiotic (P)PMID:19191900ECO:0000315 mutant phenotype evidence used in manual assertion

Table 3 shows that the minimal inhibitory concentration (MIC) of amoxicillin is higher in bacteria that contain HefA than the mutant bacteria without HefA. This suggests that HefA contributes to amoxicillin resistance.

challenge
acceptableHELHP:Q7VG76Ustangler, Team A-Squared2014-03-01 14:39:11 CSTGO:0004518 nuclease activity (F)PMID:16143456ECO:0000314 direct assay evidence used in manual assertion

Figure 3 shows DNA catalysis which can be recognized in known members of mammalian deoxyribonuclease 1 (DNase 1).

challenge

What do the icons mean in the status column?

assessment icons.jpg

Pages in category "Team A-Squared"

The following 7 pages are in this category, out of 7 total.


Jump to pages starting with: E S U Z