User:Puthuveetilnp

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
unacceptable	9CAUD:A0A0K2FL49	2016-04-11 10:13:54 CDT	GO:0016987 sigma factor activity (F)	GO_REF:0000100	ECO:0000250 sequence similarity evidence used in manual assertion	On Blastp, gp34 for Bacillus phage SPO1 had a query cover of 43%, E-value of 1e-09, and an identity of 45% when blasted against Gene 182 in Eyuki. HHpred results were the similar for Bacillus phage SPO1 and Gene 182 in Eyuki. Phage SPO1 results were: probability of 99.9% and E-value of 1.4E-26. Gene 182 in Eyuki results were: probability of 99.9% and E-value of 6.3E-24. Both were matched to protein 1OR7, a RNA Polymerase Sigma-E factor.	challenge
unacceptable	BPSP1:RP34	2016-04-11 10:34:48 CDT	GO:0016987 sigma factor activity (F)	PMID:6441846	ECO:0000314 direct assay evidence used in manual assertion	Refer to Figure 2 which shows how the function of gene 34 on Bacillus SPO1 was determined. A vector plasmid was used to help identify function. A solution of isolated RNA polymerases were inserted into lane 5 in the gel causing an aggregation of proteins at specific locations.	challenge
unacceptable	BPSP1:B6V2P5	2016-04-18 06:14:39 CDT	GO:0098026 virus tail, tube (In this paper, specifically in the section about tail assembly proteins, the authors discuss the potential function of gene 10.1. They speculate it might be a tail tube protein because the length of gene 10.1 corresponds to a gene that codes for a tail tube protein. Additionally, figure 5 shows how the authors analyzed other homologs to show how 10.01 was a tail tube protein.)	PMID:19285085	IGC: Inferred from Genomic Context UniProtKB:B6V2P4		challenge
unacceptable	9CAUD:A0A0K2D034	2016-04-23 23:54:22 CDT	GO:0098026 virus tail, tube (C)	other:GO_REF:0000100	ECO:0000247 sequence alignment evidence used in manual assertion	Blastp results shows that this gene TsarBomba_87 and SPO1 10.1 has a query cover of 97%, E-value of 7e-43, and identity of 46%.	challenge
unacceptable	9CAUD:S5YD00	2016-04-23 23:54:58 CDT	GO:0098026 virus tail, tube (C)	other:GO_REF:0000100	ECO:0000247 sequence alignment evidence used in manual assertion	Blastp results for gene 85 for Troll and gene 10.1 for SPO1 have a query cover of 97%, E-value of 6e-41, and identity of 44%.	challenge
unacceptable	9CAUD:A0A076G711	2016-04-23 23:55:06 CDT	GO:0098026 virus tail, tube (Blastp results for gp_186 for Bobb and gene 10.1 for SPO1 are a query cover of 97%, E-value of 2e-41, and identity of 44%.)	other:GO_REF:0000100	ISA: Inferred from Sequence Alignment UniProtKB:A0A076G711 UniProtKB:B6V2P5		challenge
unacceptable	9CAUD:G9J213	2016-04-23 23:55:27 CDT	GO:0098026 virus tail, tube (The blast results of gene BCP78_0213 with SP01 10.1 gave these results: query cover of 97%, E-value of 7e-43, and identity of 46%.)	other:GO_REF:0000100	ISA: Inferred from Sequence Alignment UniProtKB:B6V2P5 UniProtKB:G9J213		challenge
unacceptable	BPSP1:B6V2P5	2016-04-27 09:38:50 CDT	GO:0098026 virus tail, tube (In Figure 3, a protein gel was run on Bacillus phage SP01 tails. Two proteins were identified (look at the T section of the gel), T3 and T6. T6 is identified as a core protein and is said to be a very abundant small protein in tails. This implies that T6 is a tail core protein, which is otherwise known as a tail tube.)	PMID:6827651	IDA: Inferred from Direct Assay		challenge

acceptable:0
unacceptable:8
requires_changes:0
flagged:0

Annotations challenged by Puthuveetilnp

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
unacceptable	Mnguy1, Team Blue B	9CAUD:A0A0K2D0H8	GO:0006508 - proteolysis (P)	PMID:23688818	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 4
unacceptable	Jheins2, Team Green B	ECOLX:A0A023Z1P7	GO:2000966 - regulation of cell wall polysaccharide catabolic process (P)	PMID:16615077	ECO:0000250 sequence similarity evidence used in manual assertion	challenge	C: 2
unacceptable	Vumh, Team Kendrick Jafars	LEGPH:COAE	GO:0004140 - dephospho-CoA kinase activity (F)	PMID:25449315	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 3
unacceptable	Nitika1, Team Purple A	9CAUD:G9J205	GO:0008933 - lytic transglycosylase activity (F)	PMID:15150235	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 1
unacceptable	Mnguy1, Team Blue B	BACTU:A0A0G3E6U5	GO:0016301 - kinase activity (BlastP sequence alignment showed an E value of 7E-54 )	PMID:11292795	ISS: Inferred from Sequence Similarity UniProtKB:A0A0G3E6U5	challenge	C: 3
unacceptable	Spanch1, Team Red B	9CAUD:A0A0K2D0G3	GO:0016032 - viral process (P)	PMID:3488191	ECO:0000250 sequence similarity evidence used in manual assertion	challenge	C: 2
unacceptable	JefferyPowell, Team T1	BPHK7:Q9MCN1	GO:1905138 - positive regulation of viral DNA genome packaging via site-specific sequence recognition (P)	PMID:24711378	ECO:0000314 direct assay evidence used in manual assertion	challenge	C: 1

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