User:Jcooper

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
acceptable	RHOCB:D5AQX9	2011-09-24 15:27:11 CDT	GO:0000160 two-component signal transduction system (phosphorelay) (P)	PMID:10347192	ECO:0000314 direct assay evidence used in manual assertion	Figures 2, 3	challenge
acceptable	RHOCB:D5AQX9	2011-09-25 14:04:34 CDT	GO:0000156 two-component response regulator activity (F)	PMID:10347192	ECO:0000314 direct assay evidence used in manual assertion	Figure 5 shows DNA affinity	challenge
acceptable	RHOCA:Q9L906	2011-09-25 14:18:32 CDT	GO:0016301 kinase activity (F)	PMID:10347192	ECO:0000314 direct assay evidence used in manual assertion	Figures 2,3	challenge
acceptable	RHOCA:Q9L906	2011-09-25 14:18:32 CDT	GO:0000160 two-component signal transduction system (phosphorelay) (P)	PMID:10347192	ECO:0000314 direct assay evidence used in manual assertion	Figures 2,3	challenge
acceptable	RHOCA:Q9L906	2011-09-25 14:23:07 CDT	GO:0046777 protein autophosphorylation (P)	PMID:10347192	ECO:0000314 direct assay evidence used in manual assertion	Figure 1	challenge
unacceptable	ECOLI:USPA	2011-10-22 12:47:50 CDT	GO:0006950 response to stress (P)	PMID:1453957	ECO:0000270 expression pattern evidence used in manual assertion	Fig. 1B and Fig. 8 show uspA expression in response to growth inhibition. "Induction is related to growth inhibition" section, p.3188, rules out uspA response to specific macronutrient starvation.	challenge
unacceptable	ECOLI:USPA	2011-10-22 13:18:50 CDT	GO:0015968 stringent response (P)	PMID:18039766	ECO:0000270 expression pattern evidence used in manual assertion	In paragraph 5 of section "MG1655 response to SHX treatment at 10 min.", uspA is reported to be up-regulated in the first 5 min. of stringent response from amino acid starvation. Data shown in Supp. Table 1.	challenge
acceptable	HUMAN:AP3B1	2011-10-23 12:32:03 CDT	GO:0032438 melanosome organization (P)	PMID:11452004	ECO:0000315 mutant phenotype evidence used in manual assertion	In Fig. 5, normal melanosomes stain for tyrosinase. HPS-2 (AP-3 beta mutant) melanosomes lack tyrosinase.	challenge
acceptable	HUMAN:TYRO	2011-10-23 12:35:52 CDT	GO:0042470 melanosome (C)	PMID:1145200	ECO:0000314 direct assay evidence used in manual assertion	Fig. 5: normal melanosomes stain for Tyrosinase.	challenge

acceptable:7
unacceptable:2
requires_changes:0
flagged:0

Annotations challenged by Jcooper

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
unacceptable	Jcooper, Team Attenuators	ECOLI:USPA	GO:0015968 - stringent response (P)	PMID:18039766	ECO:0000270 expression pattern evidence used in manual assertion	challenge	C: 2
acceptable	Chrispond, Team Big Mama 50000	PSEAE:Q9HYC5	GO:0003796 - lysozyme activity (F)	PMID:21776080	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 1
acceptable	Taustin, Team Big Mama 50000	PSEAE:Q9I2Q1	GO:0070011 - peptidase activity, acting on L-amino acid peptides (F)	PMID:21776080	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 2
acceptable	Mkline, Team Cheesesteak	MOUSE:GRP1	GO:0032816 - positive regulation of natural killer cell activation (P)	PMID:21957144	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 1

0 annotations fixed by Jcooper