User:Aajones4

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
updatedbyinstructor	HPV16:VL1	2013-09-14 16:07:31 CDT	GO:0039620 T=7 icosahedral viral capsid (C)	PMID:20953154	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 5	challenge
acceptable	VIBF1:Q5E5B9	2013-09-24 12:29:49 CDT	GO:0070006 metalloaminopeptidase activity (F)	PMID:22636772	ECO:0000314 direct assay evidence used in manual assertion	Fig. 1 shows the enzyme's activity was much greater in whole cells compared to cell-free supernatant, thus suggesting activity is cell-associated and not secreted.	challenge
acceptable	VIBF1:Q5E5B9	2013-09-24 13:30:30 CDT	GO:0005737 cytoplasm (C)	PMID:22636772	ECO:0000314 direct assay evidence used in manual assertion	Table 2 shows the majority of the protein's activity is in the cytoplasm with substantial activity in the cell membrane. The protein is considered to be cytosolic with close association to the membrane.	challenge
unacceptable	ECOLI:MDTG	2013-10-08 00:28:45 CDT	GO:0005887 integral to plasma membrane (C)	PMID:2545678	ECO:0000255 match to sequence model evidence used in manual assertion	Fig. 1 shows the hydropathy plot of TetA (Multidrug resistance protein MdtG), indicating it is an integral protein to the plasma membrane.	challenge
acceptable	ECOLI:PTNC	2013-10-08 08:07:07 CDT	GO:0005887 integral to plasma membrane (C)	PMID:8774730	ECO:0000255 match to sequence model evidence used in manual assertion	Fig. 1A shows the hydropathy plot, indicating this protein is located in the plasma membrane.	challenge
acceptable	ECOLI:PTND	2013-10-08 08:12:48 CDT	GO:0005887 integral to plasma membrane (C)	PMID:8774730	ECO:0000255 match to sequence model evidence used in manual assertion	Fig. 1B shows the hydropathy plot of the protein, indicating it is located in the plasma membrane.	challenge
acceptable	SCHPO:HSP90	2013-10-24 18:12:24 CDT	GO:0061077 chaperone-mediated protein folding (P)	PMID:23664927	ECO:0000314 direct assay evidence used in manual assertion	Fig. 6 shows the addition of Hsp90 resulted in the refolding of denatured luciferase. Amount refolded was measured through a measurment of bioluminescence.	challenge
updatedbyinstructor	SCHPO:HSP90	2013-10-24 18:51:08 CDT	GO:0016887 ATPase activity (F)	PMID:23664927	ECO:0000314 direct assay evidence used in manual assertion	Fig. 4 shows ATPase activity of Hsp90 under conditions of high temperature with and without co-chaperones.	challenge
updatedbyinstructor	BACAN:Q81YT0	2013-11-10 01:30:52 CST	GO:0044847 iron acquisition by symbiont from host (P)	PMID:22865843	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 4	challenge
unacceptable	SCHPO:HSP90	2013-11-10 01:46:42 CST	GO:0051085 chaperone cofactor-dependent protein refolding (P)	PMID:23664927	ECO:0000314 direct assay evidence used in manual assertion	Fig. 4 shows ATPase activity of Hsp90 under conditions of high temperature with and without co-chaperones.	challenge

acceptable:5
unacceptable:2
requires_changes:0
flagged:0

Annotations challenged by Aajones4

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
updatedbyinstructor	Aajones4, Team Pitbull Hurricanes	HPV16:VL1	GO:0039620 - T=7 icosahedral viral capsid (C)	PMID:20953154	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 4 fixed by Aajones4
updatedbyinstructor	Lleopold, Team Protein Pushers	EBOZM:VP40	GO:0046788 - egress of virus within host cell (P)	PMID:23297401	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 2

1 annotations fixed by Aajones4