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RAT:P53

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Species (Taxon ID) Rattus norvegicus (Rat). (10116)
Gene Name(s) Tp53 (synonyms: P53)
Protein Name(s) Cellular tumor antigen p53

Tumor suppressor p53

External Links
UniProt P10361
EMBL X13058
L07910
L07904
L07905
L07906
L07907
L07908
L07909
U90328
BC081788
BC098663
PIR S02192
RefSeq NP_112251.2
XP_006246656.1
XP_006246657.1
UniGene Rn.54443
ProteinModelPortal P10361
SMR P10361
BioGrid 246960
DIP DIP-46016N
IntAct P10361
MINT MINT-4651801
STRING 10116.ENSRNOP00000047840
PhosphoSite P10361
PaxDb P10361
PRIDE P10361
Ensembl ENSRNOT00000046490
GeneID 24842
KEGG rno:24842
UCSC RGD:3889
CTD 7157
RGD 3889
eggNOG NOG80479
GeneTree ENSGT00390000015092
HOGENOM HOG000039957
HOVERGEN HBG005201
InParanoid P10361
KO K04451
OMA IRVEANH
OrthoDB EOG7JQBNW
PhylomeDB P10361
TreeFam TF106101
NextBio 604596
PRO PR:P10361
Proteomes UP000002494
ExpressionAtlas P10361
Genevestigator P10361
GO GO:0000785
GO:0005737
GO:0005829
GO:0005783
GO:0005759
GO:0005739
GO:0005730
GO:0005634
GO:0005657
GO:0005667
GO:0005524
GO:0003682
GO:0005507
GO:0003684
GO:0003677
GO:0003690
GO:0097371
GO:0002039
GO:0008022
GO:0043565
GO:0003700
GO:0001221
GO:0044212
GO:0031625
GO:0007568
GO:0007569
GO:0034605
GO:0071417
GO:0034644
GO:0006978
GO:0000733
GO:0042771
GO:0031571
GO:0007275
GO:0030308
GO:2000279
GO:0048662
GO:0000122
GO:0045892
GO:0006289
GO:0097252
GO:0043065
GO:0045787
GO:0031065
GO:0002687
GO:0043525
GO:0090200
GO:0045944
GO:0051262
GO:0051453
GO:0006357
GO:0043200
GO:0031000
GO:0034097
GO:0042493
GO:0010332
GO:0055093
GO:0010035
GO:0010038
GO:0014070
GO:0010243
GO:0006979
GO:0032526
GO:0009411
GO:0010224
GO:0033552
GO:0010165
GO:0006351
GO:0042060
Gene3D 2.60.40.720
4.10.170.10
InterPro IPR008967
IPR012346
IPR011615
IPR010991
IPR013872
IPR002117
PANTHER PTHR11447
Pfam PF00870
PF08563
PF07710
PRINTS PR00386
SUPFAM SSF47719
SSF49417
PROSITE PS00348

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0009790

embryo development

PMID:23230510[1]

ECO:0000315

P

Figure 3c: Mutant chimeras were created through blastocyte injection. The p53-/ESC- chimeras were the least likely to develop to become neonates when compared to p53+/ESC+ and p53+/ESC- chimeras. Figure 3d: Of the injected chimeras, p53-/ESC- chimeras were the least likey to have normal body size at the end of embryo development when compared to p53+/ESC+ and p53+/ESC- chimera.

complete
CACAO 9932

enables

GO:1990841

promoter-specific chromatin binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

F

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

P

Seeded From UniProt

complete

involved_in

GO:2001244

positive regulation of intrinsic apoptotic signaling pathway

PMID:27031958[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010628

positive regulation of gene expression

PMID:23164821[3]

ECO:0000316

genetic interaction evidence used in manual assertion

ComplexPortal:CPX-1120
ComplexPortal:CPX-1134
UniProtKB:P05067:PRO_0000000092
UniProtKB:P05067:PRO_0000000093

P

  • regulates_o_occurs_in:(CL:0002609)
  • regulates_expression_of:(ENSEMBL:ENSRNOG00000008015)|regulates_o_occurs_in(CL:0002609)
  • regulates_expression_of:(ENSEMBL:ENSRNOG00000019422)|regulates_o_occurs_in(CL:0002609)
  • regulates_expression_of:(ENSEMBL:ENSRNOG00000011692)

Seeded From UniProt

complete

involved_in

GO:1903205

regulation of hydrogen peroxide-induced cell death

PMID:17998337[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

F

Seeded From UniProt

complete

enables

GO:0000980

RNA polymerase II distal enhancer sequence-specific DNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P02340

F

Seeded From UniProt

complete

involved_in

GO:0048512

circadian behavior

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P02340

P

Seeded From UniProt

complete

involved_in

GO:0043153

entrainment of circadian clock by photoperiod

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P02340

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:11278372[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0097252

oligodendrocyte apoptotic process

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

P

Seeded From UniProt

complete

involved_in

GO:0090200

positive regulation of release of cytochrome c from mitochondria

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

P

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

PMID:8389468[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030308

negative regulation of cell growth

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

P

Seeded From UniProt

complete

involved_in

GO:0007569

cell aging

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

P

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

P

Seeded From UniProt

complete

involved_in

GO:0006289

nucleotide-excision repair

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

P

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

C

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

F

Seeded From UniProt

complete

enables

GO:0005507

copper ion binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

F

Seeded From UniProt

complete

involved_in

GO:0000733

DNA strand renaturation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P04637

P

Seeded From UniProt

complete

involved_in

GO:2000279

negative regulation of DNA biosynthetic process

PMID:11502571[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0097371

MDM2/MDM4 family protein binding

PMID:23941874[8]

ECO:0000353

physical interaction evidence used in manual assertion

RGD:1305332

F

Seeded From UniProt

complete

involved_in

GO:0071417

cellular response to organonitrogen compound

PMID:11502571[7]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0055093

response to hyperoxia

PMID:18337831[9]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051453

regulation of intracellular pH

PMID:16688778[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048662

negative regulation of smooth muscle cell proliferation

PMID:17659301[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045787

positive regulation of cell cycle

PMID:18026139[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045471

response to ethanol

PMID:20961644[13]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:15632413[14]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0043200

response to amino acid

PMID:17542038[15]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0043065

positive regulation of apoptotic process

PMID:16688778[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042493

response to drug

PMID:18336558[16]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042060

wound healing

PMID:18337831[9]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0034614

cellular response to reactive oxygen species

PMID:24817286[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0034605

cellular response to heat

PMID:11295070[18]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0034097

response to cytokine

PMID:17651018[19]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0033552

response to vitamin B3

PMID:17516866[20]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032526

response to retinoic acid

PMID:17962954[21]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0031625

ubiquitin protein ligase binding

PMID:16330492[22]

ECO:0000353

physical interaction evidence used in manual assertion

RGD:1305332

F

Seeded From UniProt

complete

involved_in

GO:0031000

response to caffeine

PMID:16544096[23]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0014070

response to organic cyclic compound

PMID:18093815[24]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010243

response to organonitrogen compound

PMID:18311796[25]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010224

response to UV-B

PMID:22559303[26]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010165

response to X-ray

PMID:17699727[27]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010038

response to metal ion

PMID:17466256[28]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010035

response to inorganic substance

PMID:18335527[29]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009411

response to UV

PMID:17724205[30]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008022

protein C-terminus binding

PMID:11278372[5]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q16594

F

Seeded From UniProt

complete

involved_in

GO:0007568

aging

PMID:18037131[31]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006979

response to oxidative stress

PMID:17600529[32]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:16282427[33]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

PMID:17661174[34]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:16688778[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005667

transcription factor complex

PMID:15632413[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16688778[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16282427[33]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:15632413[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0002687

positive regulation of leukocyte migration

PMID:18317410[35]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0001221

transcription cofactor binding

PMID:21792911[36]

ECO:0000353

physical interaction evidence used in manual assertion

RGD:620036

F

Seeded From UniProt

complete

part_of

GO:0000785

chromatin

PMID:15632413[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:17571083[37]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002117
InterPro:IPR012346

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002117
InterPro:IPR008967
InterPro:IPR012346

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002117
InterPro:IPR012346

C

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002117
InterPro:IPR008967
InterPro:IPR012346

P

Seeded From UniProt

complete

involved_in

GO:0006915

apoptotic process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002117

P

Seeded From UniProt

complete

enables

GO:0044212

transcription regulatory region DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011615

F

Seeded From UniProt

complete

involved_in

GO:0051262

protein tetramerization

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR010991
InterPro:IPR036674

P

Seeded From UniProt

complete

involved_in

GO:0006357

regulation of transcription by RNA polymerase II

PMID:11502571[7]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

involved_in

GO:0012501

programmed cell death

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1210

P

Seeded From UniProt

complete

involved_in

GO:0007049

cell cycle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0131

P

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0048511

rhythmic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0090

P

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0496

C

Seeded From UniProt

complete

involved_in

GO:0006915

apoptotic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0053

P

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0256
UniProtKB-SubCell:SL-0095

C

Seeded From UniProt

complete

part_of

GO:0005759

mitochondrial matrix

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0170

C

Seeded From UniProt

complete

part_of

GO:0016605

PML body

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0465

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Kawamata, M & Ochiya, T (2012) Two distinct knockout approaches highlight a critical role for p53 in rat development. Sci Rep 2 945 PubMed GONUTS page
  2. Cai, D et al. (2016) Nupr1/Chop signal axis is involved in mitochondrion-related endothelial cell apoptosis induced by methamphetamine. Cell Death Dis 7 e2161 PubMed GONUTS page
  3. Killick, R et al. (2014) Clusterin regulates β-amyloid toxicity via Dickkopf-1-driven induction of the wnt-PCP-JNK pathway. Mol. Psychiatry 19 88-98 PubMed GONUTS page
  4. Li, YZ et al. (2008) p53 initiates apoptosis by transcriptionally targeting the antiapoptotic protein ARC. Mol. Cell. Biol. 28 564-74 PubMed GONUTS page
  5. 5.0 5.1 Buschmann, T et al. (2001) Stabilization and activation of p53 by the coactivator protein TAFII31. J. Biol. Chem. 276 13852-7 PubMed GONUTS page
  6. Maheswaran, S et al. (1993) Physical and functional interaction between WT1 and p53 proteins. Proc. Natl. Acad. Sci. U.S.A. 90 5100-4 PubMed GONUTS page
  7. 7.0 7.1 7.2 Li, L et al. (2001) Polyamine depletion stabilizes p53 resulting in inhibition of normal intestinal epithelial cell proliferation. Am. J. Physiol., Cell Physiol. 281 C941-53 PubMed GONUTS page
  8. Bitar, MS et al. (2013) Caveolin-1/PTRF upregulation constitutes a mechanism for mediating p53-induced cellular senescence: implications for evidence-based therapy of delayed wound healing in diabetes. Am. J. Physiol. Endocrinol. Metab. 305 E951-63 PubMed GONUTS page
  9. 9.0 9.1 Zhang, Q et al. (2008) Hyperbaric oxygen attenuates apoptosis and decreases inflammation in an ischemic wound model. J. Invest. Dermatol. 128 2102-12 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 Huc, L et al. (2006) Multiple apoptotic pathways induced by p53-dependent acidification in benzo[a]pyrene-exposed hepatic F258 cells. J. Cell. Physiol. 208 527-37 PubMed GONUTS page
  11. Wassmann, S et al. (2007) Induction of p53 by GKLF is essential for inhibition of proliferation of vascular smooth muscle cells. J. Mol. Cell. Cardiol. 43 301-7 PubMed GONUTS page
  12. Wierød, L et al. (2008) Activation of the p53-p21(Cip1) pathway is required for CDK2 activation and S-phase entry in primary rat hepatocytes. Oncogene 27 2763-71 PubMed GONUTS page
  13. Derdak, Z et al. (2011) Activation of p53 enhances apoptosis and insulin resistance in a rat model of alcoholic liver disease. J. Hepatol. 54 164-72 PubMed GONUTS page
  14. 14.0 14.1 14.2 14.3 Saifudeen, Z et al. (2005) Combinatorial control of the bradykinin B2 receptor promoter by p53, CREB, KLF-4, and CBP: implications for terminal nephron differentiation. Am. J. Physiol. Renal Physiol. 288 F899-909 PubMed GONUTS page
  15. Lagranha, CJ et al. () Glutamine supplementation prevents exercise-induced neutrophil apoptosis and reduces p38 MAPK and JNK phosphorylation and p53 and caspase 3 expression. Cell Biochem. Funct. 25 563-9 PubMed GONUTS page
  16. Cansu, A et al. (2008) Effects of chronic treatment with valproate and oxcarbazepine on ovarian folliculogenesis in rats. Epilepsia 49 1192-201 PubMed GONUTS page
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