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Category:Team The Schmosbies

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StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptableEBOZM:VP35Fitzg128, Team The Schmosbies2013-04-14 15:23:29 CDTGO:0003723 RNA binding (F)PMID:19233284ECO:0000314 direct assay evidence used in manual assertion

VP35 binds to a polyCG dsRNA linked to agarose beads, while it does not interact with the agarose beads without RNA (Fig. 4A, lanes 1 and 2).

challenge
acceptableFLAJ1:A5FJM9Fitzg128, Team The Schmosbies2013-04-14 15:03:39 CDTGO:0071976 cell gliding (P)PMID:15805509ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2. (A-E)

(A) Wild-type F. johnsoniae UW101 without gldJ. (B) Wild-type cells gldJ. (C) gldJ mutant UW102-48 without gldJ. (D) UW102-48 complemented with pMM313 that carries gldJ. (E) Wild-type cells, which carries a truncated version of gldJ.

challenge
updatedbyinstructorFLAJ1:GLDHFitzg128, Team The Schmosbies2013-04-14 14:51:04 CDTGO:0006032 chitin catabolic process (P)PMID:14594839ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5:

Portion H-/+ Mutations in GldH show absence of chitinase activity, compared to when glDH mutants are co-expressed with plasmids containing GldH.

challenge
acceptableFLAJ1:GLDHFitzg128, Team The Schmosbies2013-04-14 14:44:19 CDTGO:0071976 cell gliding (P)PMID:14594839ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2.

Shows that wild type strain has gliding motility (A). Mutants do not (B). Mutants treated with plasmid containg GldH recover motility(C). Plasmids without GldH do not recover motility (D).

challenge
requireschangesFLAJ1:A1E5U3Fitzg128, Team The Schmosbies2013-04-14 14:32:50 CDTGO:0048870 cell motility (P)PMID:3021240ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5. Portion B.

Video showing tracts of cell movement compared to the wild phenotype, show decreased motility in cells with mutations in SprC.

challenge
requireschangesFLAJ1:A1E5U4Fitzg128, Team The Schmosbies2013-04-14 14:29:17 CDTGO:0048870 cell motility (P)PMID:3021240ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5: Tracks illustrating the movements of the cells shown in panels A to I over a 60-s period were obtained by superimposing individual digital video frames over Palmer cell slides showed decreased motility in SprD as compared to the wild type, which was shown in portion F of figure 5.

challenge
acceptableBACSU:MRPDFitzg128, Team The Schmosbies2013-04-14 13:50:23 CDTGO:0015385 sodium:hydrogen antiporter activity (F)PMID:20509166ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5. Panel B: MprD null mutants are unable to grow in the sodium rich environments compared to both wild type cells and cells with MprD placed back into the cells via a plasmid.

challenge
acceptableBACSU:MRPAFitzg128, Team The Schmosbies2013-04-14 13:47:32 CDTGO:0015385 sodium:hydrogen antiporter activity (F)PMID:20509166ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5.

Panel A: MprA null mutants are unable to grow in the sodium rich environments compared to both wild type and cells with MprA placed back into the cells via a plasmid.

challenge
acceptableBACSU:CHISFitzg128, Team The Schmosbies2013-04-14 13:18:23 CDTGO:0016977 chitosanase activity (F)PMID:23065029ECO:0000314 direct assay evidence used in manual assertion

Figure 3.

Two strains of the Fungus Rhizopus mycelium were tested in a control and experimental group. The experimental groups with CSNV26 expressed had deformed the chitosan cell walls of the fungi.

challenge
requireschanges9TRYP:P90629Swans181, Team The Schmosbies2013-04-13 21:00:31 CDTGO:0006355 regulation of transcription, DNA-dependent (P)PMID:109187ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5 shows an immunoprecipitation, demonstrating that without gBP21, the RNA no longer has separation from editing.

challenge
updatedbyinstructorTRYB2:Q4GZ50Swans181, Team The Schmosbies2013-04-13 20:35:47 CDTGO:0004525 ribonuclease III activity (F)PMID:16963561ECO:0000314 direct assay evidence used in manual assertion

Figure 4 shows U-deletion cleavage activity of rTbMP90 (also known as KREPB1). Deletion of this is used, mutating the trypanosomes and changing the phenotype as a result.

challenge
acceptableTRYBB:O76290Swans181, Team The Schmosbies2013-04-13 20:19:14 CDTGO:0047040 pteridine reductase activity (F)PMID:20545846ECO:0000315 mutant phenotype evidence used in manual assertion

Using figures 2 and 3 to determine the function for PTR1. Figure 2 shows the production of tetracycline with and without PTR1 in the cells and their resulting virulence in Figure 4. Figure 3 shows the enzyme activity of PTR1.

challenge
requireschangesBACSU:FLGMFitzg128, Team The Schmosbies2013-03-31 12:06:20 CDTGO:0043064 flagellum organization (P)PMID:22730131ECO:0000315 mutant phenotype evidence used in manual assertion

Figures 5 A and B. FlgM shows higher miller unit activity compared to control

challenge
updatedbyinstructorBACSU:FLHOFitzg128, Team The Schmosbies2013-03-31 11:47:17 CDTGO:0071978 bacterial-type flagellar swarming motility (P)PMID:22730131ECO:0000315 mutant phenotype evidence used in manual assertion

Fig 1.C. Mutations were engineered into fLHO and expression of mutant reduced swarm motility.

challenge
updatedbyinstructorBACSU:FLIKFitzg128, Team The Schmosbies2013-03-31 11:39:29 CDTGO:0071978 bacterial-type flagellar swarming motility (P)PMID:22730131ECO:0000315 mutant phenotype evidence used in manual assertion

Fig. 1C shows that a mutation in fliK abolished the swarming motility observed in WT cells.

challenge

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Pages in category "Team The Schmosbies"

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