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Category:Team Celestial Seasonings

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SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesVIBC3:A5F4R5Konalash, Team Celestial Seasonings2012-04-15 15:32:13 CDTGO:0043165 Gram-negative-bacterium-type cell outer membrane assembly (P)PMID:9371445ECO:0000315 mutant phenotype evidence used in manual assertion

Fig. 3b. In an epsE mutant, detection of proteins critical for proper outer membrane assembly are not observed as they are in the wild type strain.

challenge
unacceptableVIBC3:A5F4R7Konalash, Team Celestial Seasonings2012-04-15 15:12:07 CDTGO:0015628 protein secretion by the type II secretion system (P)PMID:9371445ECO:0000315 mutant phenotype evidence used in manual assertion

table 5. protease (secreted via the general secretory pathway/ type II secretion system) activity is significantly less in an epsC mutant compared to wild type.

challenge
requireschangesBURCE:O08350Konalash, Team Celestial Seasonings2012-04-15 14:28:25 CDTGO:0033250 penicillinase activity (F)PMID:3046483ECO:0000316 genetic interaction evidence used in manual assertion

table 3. Penicillinase activity in a strain of E. coli with no background penicillinase activity was observed upon introduction of a vector containing penA from P. cepacia.

challenge
requireschangesHUMAN:PDIA1Kuenzels, Team Celestial Seasonings2012-04-15 13:43:05 CDTGO:0006457 protein folding (P)PMID:11694508ECO:0000314 direct assay evidence used in manual assertion

Figure 1 shows increased refolding of proinsulin in cells with PDI in comparison to those lacking PDI.

challenge
requireschangesYEAST:SAK1Kuenzels, Team Celestial Seasonings2012-04-15 02:12:26 CDTGO:0007124 pseudohyphal growth (P)PMID:19880754ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1 shows a lack of pseudalhyphal formation in the sak1 mutants compared to the wild-type.

challenge
requireschangesYEAST:CSR2Kuenzels, Team Celestial Seasonings2012-04-15 02:09:02 CDTGO:0007124 pseudohyphal growth (P)PMID:15632429ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4A shows decreased pseudohyphal formation in mrg19 mutants compared to the wild-type.

challenge
acceptableCLOBH:A5I1L8Konalash, Team Celestial Seasonings2012-04-14 21:35:27 CDTGO:0070417 cellular response to cold (P)PMID:21367479ECO:0000315 mutant phenotype evidence used in manual assertion

table 4. the growth rate of the cspB mutant is significantly lower than wild type at 15 and 20 degrees C.

challenge
requireschangesPSEAE:LEP4Konalash, Team Celestial Seasonings2012-04-14 20:04:27 CDTGO:0016485 protein processing (P)PMID:20338182ECO:0000315 mutant phenotype evidence used in manual assertion

supplementary figure 3: An increase in mass is observed for minor pilins FimU, PilV, PilW, PilX, and PilE when pilD is inactivated, which suggests they are processed by pilD.

challenge
acceptableSERMA:Q93Q73Kuenzels, Team Celestial Seasonings2012-04-13 21:59:19 CDTGO:0004309 exopolyphosphatase activity (F)PMID:16598824ECO:0000314 direct assay evidence used in manual assertion

Table 2. E. coli transformed with a plasmid containing the S. marcescens ppx gene had increased polyphosphatase activity by 25-fold.

challenge
acceptableSERMA:Q93Q74Kuenzels, Team Celestial Seasonings2012-04-13 21:57:57 CDTGO:0008976 polyphosphate kinase activity (F)PMID:16598824ECO:0000314 direct assay evidence used in manual assertion

Table 1. E. coli transformed with a plasmid containing the S. marcescens ppk gene had increased polyphosphate kinase activity by 16-fold.

challenge
requireschangesPAEPO:A5YBV1Kuenzels, Team Celestial Seasonings2012-04-13 12:07:16 CDTGO:0002781 antifungal peptide production (P)PMID:17980146ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4A shows the growth of the fungus Fusarium oxysporum in the presence of the wild-type and the fusA mutant. The wild-type was able to inhibit the growth of the fungus and the mutant was not.

challenge
acceptableCORGL:ILVCKonalash, Team Celestial Seasonings2012-04-12 23:29:45 CDTGO:0008677 2-dehydropantoate 2-reductase activity (F)PMID:12948643ECO:0000315 mutant phenotype evidence used in manual assertion

Table 2. Introduction of the ilvC expression vector significantly increases the ketopantoate reductase activity that is absent in the ilvc insertion mutant.

challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesVIBC3:A5F6K0Konalash, Team Celestial Seasonings2012-04-01 15:58:29 CDTGO:0048870 cell motility (P)PMID:11260476ECO:0000315 mutant phenotype evidence used in manual assertion

fig. 2: fliA was expressed from an inducible promoter in S. typhimurium and V. cholerae fliA mutants and restored motility. (Code IGI also applies here).

fig. 3 fliA mutant has a truncated flagellum.

fig. 4. known sigma 28-dependent promoters have little/no activity in a fliA mutant. the promoters are upregulated upon introduction of a fliA overexpression vector.

challenge
requireschangesMYCTU:DEVRKuenzels, Team Celestial Seasonings2012-03-30 17:40:47 CDTGO:0071456 cellular response to hypoxia (P)PMID:12694625ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5B demonstrates that DosR (Asp-54Glu) mutants have significantly reduced hypoxic gene induction compared to the wild-type DosR.

challenge
requireschangesYERPE:Q74PX8Konalash, Team Celestial Seasonings2012-03-29 16:20:17 CDTGO:0042710 biofilm formation (P)PMID:21559445ECO:0000315 mutant phenotype evidence used in manual assertion

fig. 3: a fully functional hmsT gene product is necessary for biofilm formation.

challenge

Pages in category "Team Celestial Seasonings"

The following 2 pages are in this category, out of 2 total.