User:Konalash

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
acceptable	CORGL:ILVC	2012-04-12 23:29:45 CDT	GO:0008677 2-dehydropantoate 2-reductase activity (F)	PMID:12948643	ECO:0000315 mutant phenotype evidence used in manual assertion	Table 2. Introduction of the ilvC expression vector significantly increases the ketopantoate reductase activity that is absent in the ilvc insertion mutant.	challenge
requireschanges	PSEAE:LEP4	2012-04-14 20:04:27 CDT	GO:0016485 protein processing (P)	PMID:20338182	ECO:0000315 mutant phenotype evidence used in manual assertion	supplementary figure 3: An increase in mass is observed for minor pilins FimU, PilV, PilW, PilX, and PilE when pilD is inactivated, which suggests they are processed by pilD.	challenge
acceptable	CLOBH:A5I1L8	2012-04-14 21:35:27 CDT	GO:0070417 cellular response to cold (P)	PMID:21367479	ECO:0000315 mutant phenotype evidence used in manual assertion	table 4. the growth rate of the cspB mutant is significantly lower than wild type at 15 and 20 degrees C.	challenge
requireschanges	BURCE:O08350	2012-04-15 14:28:25 CDT	GO:0033250 penicillinase activity (F)	PMID:3046483	ECO:0000316 genetic interaction evidence used in manual assertion	table 3. Penicillinase activity in a strain of E. coli with no background penicillinase activity was observed upon introduction of a vector containing penA from P. cepacia.	challenge
unacceptable	VIBC3:A5F4R7	2012-04-15 15:12:07 CDT	GO:0015628 protein secretion by the type II secretion system (P)	PMID:9371445	ECO:0000315 mutant phenotype evidence used in manual assertion	table 5. protease (secreted via the general secretory pathway/ type II secretion system) activity is significantly less in an epsC mutant compared to wild type.	challenge
requireschanges	VIBC3:A5F4R5	2012-04-15 15:32:13 CDT	GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly (P)	PMID:9371445	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 3b. In an epsE mutant, detection of proteins critical for proper outer membrane assembly are not observed as they are in the wild type strain.	challenge

acceptable:2
unacceptable:1
requires_changes:3
flagged:0

Annotations challenged by Konalash

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
requireschanges	Vacca005, Team Dinosaurs are Great	VIBCH:TCPA2	GO:0051701 - biological process involved in interaction with host (P)	PMID:12055286	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 2

0 annotations fixed by Konalash

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
requireschanges	YERPE:Q74PX8	2012-03-29 16:20:17 CDT	GO:0042710 biofilm formation (P)	PMID:21559445	ECO:0000315 mutant phenotype evidence used in manual assertion	fig. 3: a fully functional hmsT gene product is necessary for biofilm formation.	challenge
requireschanges	VIBC3:A5F6K0	2012-04-01 15:58:29 CDT	GO:0048870 cell motility (P)	PMID:11260476	ECO:0000315 mutant phenotype evidence used in manual assertion	fig. 2: fliA was expressed from an inducible promoter in S. typhimurium and V. cholerae fliA mutants and restored motility. (Code IGI also applies here). fig. 3 fliA mutant has a truncated flagellum. fig. 4. known sigma 28-dependent promoters have little/no activity in a fliA mutant. the promoters are upregulated upon introduction of a fliA overexpression vector.	challenge

acceptable:0
unacceptable:0
requires_changes:2
flagged:0

Annotations challenged by Konalash

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by Konalash