VIBC3:A5F6K0

Species (Taxon ID)	Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 /O395). (345073)
Gene Name(s)	No Information Provided.
Protein Name(s)	RNA polymerase sigma factor FliA (ECO:0000256 with HAMAP-Rule:MF_00962) RNA polymerase sigma factor for flagellar operon (ECO:0000256 with HAMAP-Rule:MF_00962) Sigma F (ECO:0000256 with HAMAP-Rule:MF_00962) Sigma-28 (ECO:0000256 with HAMAP-Rule:MF_00962)
External Links
UniProt	A5F6K0
EMBL	CP000627 CP001235
RefSeq	YP_001217593.1 YP_002820409.1
ProteinModelPortal	A5F6K0
STRING	345073.VC0395_A1654
EnsemblBacteria	ABQ21216 ACP10173
GeneID	5135514 7775990
KEGG	vco:VC0395_A1654 vcr:VC395_2181
eggNOG	COG1191
HOGENOM	HOG000270271
KO	K02405
OMA	MPKGIQK
Proteomes	UP000000249 UP000001630
GO	GO:0005737 GO:0003677 GO:0003899 GO:0003700 GO:0016987 GO:0001123
Gene3D	1.10.10.10
HAMAP	MF_00962
InterPro	IPR014284 IPR000943 IPR007627 IPR007624 IPR007630 IPR012845 IPR013325 IPR013324 IPR028617 IPR011991
Pfam	PF04542 PF04539 PF04545
PRINTS	PR00046
SUPFAM	SSF88659 SSF88946
TIGRFAMs	TIGR02479 TIGR02937

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
	GO:0048870	cell motility	PMID:11260476	ECO:0000315	mutant phenotype evidence used in manual assertion		P		fig. 2: fliA was expressed from an inducible promoter in S. typhimurium and V. cholerae fliA mutants and restored motility. (Code IGI also applies here). fig. 3 fliA mutant has a truncated flagellum. fig. 4. known sigma 28-dependent promoters have little/no activity in a fliA mutant. the promoters are upregulated upon introduction of a fliA overexpression vector.	complete CACAO 4211
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR012845 InterPro:IPR028617	F		Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013325 InterPro:IPR014284	F		Seeded From UniProt	complete
enables	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR012845 InterPro:IPR028617	F		Seeded From UniProt	complete
involved_in	GO:0006352	DNA-templated transcription, initiation	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013325 InterPro:IPR014284 InterPro:IPR028617	P		Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013325 InterPro:IPR014284 InterPro:IPR028617	P		Seeded From UniProt	complete
enables	GO:0016987	sigma factor activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR012845 InterPro:IPR028617	F		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F		Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0731	P		Seeded From UniProt	complete
enables	GO:0016987	sigma factor activity	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0731	F		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0963	C		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000040	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-SubCell:SL-0086	C		Seeded From UniProt	complete
involved_in	GO:0001123	transcription initiation from bacterial-type RNA polymerase promoter	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000184434	P		Seeded From UniProt	complete
enables	GO:0016987	sigma factor activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000184434	F		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000184434	C		Seeded From UniProt	complete
involved_in	GO:0010468	regulation of gene expression	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000184434	P		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000184434	F		Seeded From UniProt	complete
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