Status | Page | User | Date/Time | GO Term (Aspect) | Reference | Evidence | Notes | Links |
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updatedbyinstructor | LISMO:CSPB | Enas.Alareef, Team Alpha | 2016-04-19 04:39:45 CDT | GO:0043488 regulation of mRNA stability (P) | PMID:23952475 | ECO:0000316 genetic interaction evidence used in manual assertion | FIG. 3. Effect of cold shock proteins on hly
mRNA stability as determined by quantitative
reverse transcription–polymerase chain reaction.
Total RNA was isolated from log phase
EGDe wild-type and DcspABD cells at defined
time intervals after addition of rifampicin.
| challenge |
unacceptable | LISIN:DPS | Enas.Alareef, Team Alpha | 2016-04-15 10:08:09 CDT | GO:0033554 cellular response to stress (P) | PMID:10981685 | ECO:0000315 mutant phenotype evidence used in manual assertion | Fig4 showed a single 0.8-kb transcript hybridizing with the probe suggesting the existence of a monocistronic mRNA for flp gene expression. flp mRNA was detected at a significant level in absence of stress but after cold shock, a sharp increase of flp mRNA level was observed. Moreover, the abundance of the specific mRNA also increased significantly after heat shock suggesting that Flp could be a heat shock protein. These results strongly suggest that the L.monocytogenes LO28 Flp corresponds to the 19-kDa multi-stress protein
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unacceptable | LISMN:A0A0E1R9H5 | Enas.Alareef, Team Alpha | 2016-03-03 10:29:04 CST | GO:0000163 protein phosphatase type 1 activity (F) | PMID:25841007 | ECO:0000315 mutant phenotype evidence used in manual assertion | Fig 3: Growth curves for Listeria monocytogenes and histidine kinase deletion mutant strains and the wild-type strain EGD-e in BHI broth at 3°C. All the strains were grown for 23 days, and the OD600 was measured every hour. The other histidine kinase mutant strains showed no significantly impaired growth compared to the wild type. (B) Growth curves for L. monocytogenes histidine kinase deletion mutant strains and the wild-type strain EGD-e in BHI broth at 37°C. . The data shown represent the mean OD600 values and standard deviations for five replicate cultures. The correspondence between the OD600 values and viable cell numbers was verified by plate counts.
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acceptable | LISMN:Q9LAT7 | Enockmensah.Gyebi, Team Alpha | 2016-02-23 16:02:31 CST | GO:0016049 cell growth (P) | PMID:11083832 | ECO:0000315 mutant phenotype evidence used in manual assertion | Figure 5A shows growth at 5°C and oppA mutant. Figure 5B shows bacteria were grown to mid-log exponential phase at 37°C and transferred to 5°C until the end of growth. The growth was at 5°C and was restored in an oppA-complemented mutant.
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updatedbyinstructor | LISIN:CSPB | Nicole.Lapage, Team Alpha | 2016-02-22 22:07:02 CST | GO:0045893 positive regulation of transcription, DNA-templated (P) | PMID:23952475 | ECO:0000316 genetic interaction evidence used in manual assertion | Figure 2. This indicated CspB's role in the regulation of hly mRNA transcription and Listerolysin O production.
| challenge |
unacceptable | LISMO:CSPB | Enas.Alareef, Team Alpha | 2016-02-22 21:23:46 CST | GO:0043620 regulation of DNA-templated transcription in response to stress (P) | PMID:19151183 | ECO:0000315 mutant phenotype evidence used in manual assertion | fig 2F Growth kinetics of ΔcspB, ΔcspD, and ΔcspBD at 4°C in DM. The results represent the means (± standard deviations) from duplicates of three independent experimental runs.
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updatedbyinstructor | CAUCN:D9HP82 | Elizabeth.Lukas, Team Alpha | 2016-02-22 18:16:47 CST | GO:0060274 maintenance of stationary phase (P) | PMID:20607520 | ECO:0000315 mutant phenotype evidence used in manual assertion | | challenge |
updatedbyinstructor | LISMO:CSPA | Sydney.B.Bork, Team Alpha | 2016-02-19 11:50:09 CST | GO:0048255 mRNA stabilization (P) | PMID:23952475 | ECO:0000316 genetic interaction evidence used in manual assertion | Fig. 1 shows difference in hemolysis in the wild-type and cspABD L. monocytogenes species.
GO term for the original annotation has been made obsolete. DAS replaced it with GO:0048255. See talk page for details.
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Pages in category "Team Alpha"
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