Category:CACAO Spring 2016

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cacao.jpg
CACAO
the intercollegiate annotation competition!
The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions. If you are interested in participating, please email us - ecoliwiki@gmail.com.
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CACAO Spring 2016

Quick Links

  • Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
  • Click here for Biocurator Training Videos that go over the entire annotation process
  • For more help on evidence codes
Look through the helpful handouts for students. This includes printable documents REQUIRED for class

Participating schools

  • Texas A&M
  • North Dakota State
  • Suffolk University

Lecture slides

Background info is at the About CACAO page. Links to new material will be posted here.

Old ppts:

Evidence codes you are permitted to choose from

  • Here's a list of the evidence codes that CACAO students may use:
  1. IDA: Inferred from Direct Assay
  2. IMP: Inferred from Mutant Phenotype
  3. IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
  4. ISS: Inferred from Sequence or Structural Similarity - almost always requires with/from field to be filled in
  5. ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
  6. ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
  7. ISM: Inferred from Sequence Model - requires with/from field to be filled in
  8. IGC: Inferred from Genomic Context

ALL other codes, even if used correctly, will cause the annotation to be rejected by the judges

Virus-related GO terms

  • For those of you interested in annotating proteins from viruses and phages:

Scoreboard

Calendar of Rounds

Inning Activity Start End Notes

instruction

  • 2016-01-19
  • 06:00 PM
  • 2016-01-26
  • 05:59 PM

First week of classes at TAMU.


instruction

  • 2016-01-26
  • 06:00 PM
  • 2016-02-02
  • 05:59 PM

Introduction

1

annotation

  • 2016-02-02
  • 06:00 PM
  • 2016-02-09
  • 05:59 PM

TAMU Goal: 5 attempted annotations by end of round

1

challenge

  • 2016-02-09
  • 06:00 PM
  • 2016-02-16
  • 05:59 PM

TAMU Goal: 3 challenges by end of round

2

annotation

  • 2016-02-16
  • 06:00 PM
  • 2016-02-23
  • 05:59 PM

2

challenge

  • 2016-02-23
  • 06:00 PM
  • 2016-03-01
  • 05:59 PM

TAMU Goal: 8 accepted annotations by end of round

3

annotation

  • 2016-03-01
  • 06:00 PM
  • 2016-03-08
  • 05:59 PM

3

challenge

  • 2016-03-08
  • 06:00 PM
  • 2016-03-15
  • 05:59 PM

TAMU Goal: 12 accepted annotations by end of round

4

annotation

  • 2016-03-15
  • 06:00 PM
  • 2016-03-22
  • 05:59 PM

NDSU & TAMU Spring Break, but you can still annotate!

4

open

  • 2016-03-22
  • 06:00 PM
  • 2016-03-29
  • 05:59 PM

4

challenge

  • 2016-03-29
  • 06:00 PM
  • 2016-04-05
  • 05:59 PM

TAMU Goal: 17 accepted annotations by end of round

5

annotation

  • 2016-04-05
  • 06:00 PM
  • 2016-04-12
  • 05:59 PM

Last chance to enter new annotations

TAMU Goal: 20 accepted annotations by end of round

5

open

  • 2016-04-12
  • 06:00 PM
  • 2016-04-19
  • 05:59 PM

TAMU Requirement: 20 accepted annotations by end of round

Surprise! It's a bonus opportunity to annotate. Don't waste it!

instruction

  • 2016-04-19
  • 07:00 PM
  • 2016-04-19
  • 9 PM

Discuss final annotations and instructor assessments

instruction

  • 2016-04-26
  • 07:00 PM
  • 2016-04-26
  • 09:00 PM

Final CACAO class meeting at TAMU

Subcategories

This category has the following 20 subcategories, out of 20 total.