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CACAO
the intercollegiate annotation competition!
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| The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions.
If you are interested in participating, please email us - ecoliwiki@gmail.com.
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CACAO Spring 2016
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Participating schools
- Texas A&M
- North Dakota State
- Suffolk University
Lecture slides
Background info is at the About CACAO page. Links to new material will be posted here.
Old ppts:
Evidence codes you are permitted to choose from
- Here's a list of the evidence codes that CACAO students may use:
- IDA: Inferred from Direct Assay
- IMP: Inferred from Mutant Phenotype
- IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
- ISS: Inferred from Sequence or Structural Similarity - almost always requires with/from field to be filled in
- ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
- ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
- ISM: Inferred from Sequence Model - requires with/from field to be filled in
- IGC: Inferred from Genomic Context
ALL other codes, even if used correctly, will cause the annotation to be rejected by the judges
Virus-related GO terms
- For those of you interested in annotating proteins from viruses and phages:
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Calendar of Rounds
| Inning |
Activity |
Start |
End |
Notes
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instruction
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First week of classes at TAMU.
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instruction
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Introduction
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1
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annotation
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TAMU Goal: 5 attempted annotations by end of round
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1
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challenge
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TAMU Goal: 3 challenges by end of round
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2
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annotation
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2
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challenge
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TAMU Goal: 8 accepted annotations by end of round
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3
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annotation
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3
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challenge
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TAMU Goal: 12 accepted annotations by end of round
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4
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annotation
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NDSU & TAMU Spring Break, but you can still annotate!
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4
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open
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4
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challenge
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TAMU Goal: 17 accepted annotations by end of round
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5
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annotation
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Last chance to enter new annotations
TAMU Goal: 20 accepted annotations by end of round
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5
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open
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TAMU Requirement: 20 accepted annotations by end of round
Surprise! It's a bonus opportunity to annotate. Don't waste it!
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instruction
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Discuss final annotations and instructor assessments
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instruction
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Final CACAO class meeting at TAMU
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Subcategories
This category has the following 20 subcategories, out of 20 total.
