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CACAO
the intercollegiate annotation competition!
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| The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions.
If you are interested in participating, please email us - EcoliWiki team or Jim or Suzi.
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CACAO Fall 2014
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Quick Links
- Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
- For more help on evidence codes
Participating schools
- Texas A&M University
- University of Wisconsin- Parkside
Lecture slides
Past background info is at the About CACAO page. Links to new material will be posted here.
TAMU students, the powerpoint used in your first few classes is posted below.
UW-P students, the powerpoint for all sections of CACAO is below.
Evidence codes you are permitted to choose from
- Here's a list of the evidence codes that CACAO students may use:
- IDA: Inferred from Direct Assay
- IMP: Inferred from Mutant Phenotype
- IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
- ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
- ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
- ISM: Inferred from Sequence Model - requires with/from field to be filled in
- IGC: Inferred from Genomic Context
ALL other codes, even if used correctly, will cause the annotation to be rejected by the judges
Virus-related GO terms
- For those of you interested in annotating proteins from viruses and phages:
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Calendar of Rounds
| Inning |
Activity |
Start |
End |
Notes
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0
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instruction
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First 2 weeks at TAMU
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1
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annotation
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First week of competition
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1
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challenge
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2
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annotation
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UW-P officially joins the competition
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2
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challenge
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3
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annotation
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3
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challenge
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4
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annotation
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4
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challenge
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5
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annotation
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5
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challenge
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note that this goes over Thanksgiving!
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Subcategories
This category has the following 20 subcategories, out of 20 total.
Pages in category "CACAO Fall 2014"
The following 3 pages are in this category, out of 3 total.
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