GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
Category talk:CACAO Fall 2014
Contents
GO term requests
In addition to getting points for annotations, students can get credit for getting the GO consortium to improve GO. Record term requests here. For the link, use a link to a Sourceforge ticket.
| User | GO ID | term name | Link | Type | Status | Notes |
|---|---|---|---|---|---|---|
| GO:0089705 |
protein localization to outer membrane |
https://sourceforge.net/p/geneontology/ontology-requests/11243/ |
New term request |
accepted by GOC |
||
| GO:0090614 |
5'-methylthioadenosine deaminase activity |
https://sourceforge.net/p/geneontology/ontology-requests/11249/ |
New term request |
accepted by GOC |
||
| GO:0090613 |
5'-deoxyadenosine deaminase activity |
https://sourceforge.net/p/geneontology/ontology-requests/11248/ |
New term request |
accepted by GOC |
||
| GO:0090612 |
cAMP deaminase activity |
https://sourceforge.net/p/geneontology/ontology-requests/11247/ |
New term request |
accepted by GOC |
||
| GO:0097657 |
3',5'-nucleotide bisphosphate phosphatase activity |
https://sourceforge.net/p/geneontology/ontology-requests/11191/ |
New term request |
accepted by GOC |
||
| GO:1903663 |
L-altrarate catabolic process |
https://sourceforge.net/p/geneontology/ontology-requests/11315/ |
New term request |
accepted by GOC |
L-altrarate catabolic process | |
| GO:1903662 |
L-altrarate metabolic process |
https://sourceforge.net/p/geneontology/ontology-requests/11315/ |
New term request |
accepted by GOC |
L-altrarate metabolic process | |
| GO:1990594 |
L-altrarate dehydratase activity |
https://sourceforge.net/p/geneontology/ontology-requests/11316/ |
New term request |
accepted by GOC |
http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:1990594#term=info L-altrarate dehydratase activity Will be accepted when RHEA gives GOC a reaction | |
|
JSnowden |
GO:0044872 |
lipoprotein localization |
https://sourceforge.net/p/geneontology/ontology-requests/11326/ |
New term request |
accepted by GOC |
Lipoprotein localization to a membrane Accepted lipoprotein localization ;GO:0044872 lipoprotein localization to membrane ;GO:0044873 lipoprotein localization to outer membrane ;GO:0044874 |
|
JSnowden |
GO:0044874 |
lipoprotein localization to outer membrane |
https://sourceforge.net/p/geneontology/ontology-requests/11326/ |
New term request |
accepted by GOC |
Lipoprotein localization to outer membrane |
|
JPShaw |
https://sourceforge.net/p/geneontology/ontology-requests/11334/
|
New term request |
requested |
NTR: Regulation of killing by virus of host cell by post-segregational killing | ||
|
JPShaw |
https://sourceforge.net/p/geneontology/ontology-requests/11334/
|
New term request |
requested |
NTR: Negative regulation of killing by virus of host cell by post-segregational killing | ||
|
https://sourceforge.net/p/geneontology/ontology-requests/11334/
|
New term request |
requested |
NTR: Negative regulation by virus of killing by virus of host cell by post-segregational killing | |||
|
https://sourceforge.net/p/geneontology/ontology-requests/11338/ |
New term request |
requested |
||||
| GO:1903652 |
modulation by virus of host cytoplasmic transport |
https://sourceforge.net/p/geneontology/ontology-requests/11339/ |
New term request |
accepted by GOC |
[[:Category:GO:1903652 ! modulation by virus of host cytoplasmic transport|GO:1903652 ! modulation by virus of host cytoplasmic transport]] | |
|
https://sourceforge.net/p/geneontology/ontology-requests/11340/
|
New term request |
requested |
NTR: modification by plasmid of morphology or physiology | |||
|
https://sourceforge.net/p/geneontology/ontology-requests/11335/
|
New term request |
requested |
NTR: regulation by virus of cytolysis by virus of host cell used in 10411 | |||
|
https://sourceforge.net/p/geneontology/ontology-requests/11336/
|
New term request |
requested |
NTR: negative regulation of cytolysis by virus of host cell used in 10411 | |||
|
JSnowden |
GO:0044873 |
lipoprotein localization to membrane |
https://sourceforge.net/p/geneontology/ontology-requests/11326/ |
New term request |
accepted by GOC |
Lipoprotein localization to a membrane Accepted lipoprotein localization ;GO:0044872 lipoprotein localization to membrane ;GO:0044873 lipoprotein localization to outer membrane ;GO:0044874 |
| edit table |
TAMU
TAMU practice papers
Put the PMID here after a * on a new line and add your username by clicking on the icon that looks like a signature. You should get something like this:
- PMID:something --JimHu (talk) 10:49, 3 September 2014 (CDT)
- PMID:24955762 --Vangals (talk) 12:23, 4 September 2014 (CDT)
- PMID:24743732 --Nihal salem (talk) 23:11, 6 September 2014 (CDT)
- PMID:25110664 --Anjali (talk) 22:17, 8 September 2014 (CDT)
- PMID:16585747 --JSnowden (talk) 19:14, 9 September 2014 (CDT)
- PMID:11935466--JPShaw (talk) 19:15, 9 September 2014 (CDT)JPShaw
- PMID:25193658--JMJ (talk) 19:17, 9 September 2014 (CDT)JMJ
- PMID:24938734--min.lorna (talk) 19:17, 9 September 2014 (CDT)
- PMID:25194143 --Mhodde (talk) 19:18, 9 September 2014 (CDT)
- PMID:24917677--Isabella (talk) 19:22, 9 September 2014 (CDT)
Annotation examples for 9/16/2014
Examples of good and not so good annotations from past competitions.
- 9198
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3601365/#!po=24.2857
- http://amigo.geneontology.org/amigo/term/GO:0036388
Annotation examples for Sep30
- Nihal
This is the annotation I will be discussing , it deals with inaccurate choice of a protein page
http://gowiki.tamu.edu/wiki/index.php?title=Special:Cacao/annotation/10140&opage=API
the wrong page http://gowiki.tamu.edu/wiki/index.php/ZYMMB:I6YWI4
the right page http://www.uniprot.org/uniprot/Q01578
- Wes - 30 Sep[1]
Annotation examples for 10/7
http://gowiki.tamu.edu/wiki/index.php?title=Special:Cacao/annotation/10148&opage=API
http://gowiki.tamu.edu/wiki/index.php?title=Special:Cacao/annotation/10147 - Andy
Wisconsin-Parkside
Annotation for 10/14
http://gowiki.tamu.edu/wiki/index.php?title=Special:Cacao/annotation/10154&opage=API http://gowiki.tamu.edu/wiki/index.php?title=Special:Cacao/annotation/10155&opage=API
Annotation examples for 10/21
http://gowiki.tamu.edu/wiki/index.php?title=Special:Cacao/annotation/10172&opage=API
Annotation examples for 11/11
- http://gowiki.tamu.edu/wiki/index.php?title=Special:Cacao/annotation/10230&opage=API
- http://gowiki.tamu.edu/wiki/index.php?title=Special:Cacao/annotation/10227&opage=API
Discussion for Nov 25
5
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