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User:Tsonyake

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CACAO Fall 2014

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableACIBA:Q5K1Z42014-09-28 10:34:54 CDTGO:0052150 positive regulation by symbiont of host apoptotic process (P)PMID:25156738ECO:0000314 direct assay evidence used in manual assertion

Figure 2b-d

challenge
updatedbyinstructorCANLF:F1PY542014-10-26 17:47:48 CDTGO:0008285 negative regulation of cell proliferation (P)PMID:24950142ECO:0000314 direct assay evidence used in manual assertion

Figure 3

challenge
updatedbyinstructorCANLF:F1PY542014-11-03 15:38:25 CSTGO:0046427 positive regulation of JAK-STAT cascade (P)PMID:24950142ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
acceptablePSEAE:FMPO2014-11-04 10:47:00 CSTGO:0005829 cytosol (C)PMID:25049409ECO:0000314 direct assay evidence used in manual assertion

Figure 4b

challenge
acceptablePSEAE:PILB2014-11-04 10:48:52 CSTGO:0048870 cell motility (P)PMID:25049409ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3c

challenge
updatedbyinstructorCANLF:R9XMN72014-11-16 18:02:49 CSTGO:0008285 negative regulation of cell proliferation (P)PMID:23964570ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
updatedbyinstructorCANLF:R9XMN72014-11-16 18:07:21 CSTGO:0046427 positive regulation of JAK-STAT cascade (P)PMID:23964570ECO:0000314 direct assay evidence used in manual assertion

Figure 6

challenge
updatedbyinstructorCANLF:Q75UL52014-11-16 18:09:42 CSTGO:0046427 positive regulation of JAK-STAT cascade (P)PMID:24950142ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
updatedbyinstructorCANLF:Q75UL52014-11-16 18:12:17 CSTGO:0008285 negative regulation of cell proliferation (P)PMID:24950142ECO:0000314 direct assay evidence used in manual assertion

Figure 3

challenge
acceptablePSEAE:FMPO2014-11-16 18:47:58 CSTGO:0009986 cell surface (C)PMID:25049409ECO:0000314 direct assay evidence used in manual assertion

Fig 4b

challenge
updatedbyinstructorCANLF:R9XMN72014-11-18 20:33:50 CSTGO:0030101 natural killer cell activation (P)PMID:23964570ECO:0000314 direct assay evidence used in manual assertion

Figure 5

challenge
updatedbyinstructorCANLF:Q75UL52014-11-18 20:37:59 CSTGO:0030101 natural killer cell activation (P)PMID:23964570ECO:0000314 direct assay evidence used in manual assertion

Figure 5

challenge
updatedbyinstructorPSEAE:PILB2014-11-23 12:07:06 CSTGO:0043107 type IV pilus-dependent motility (P)PMID:25049409ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3b and c shows the effects of truncated pilb genes. They are unable to restore the twitching ability to the pilB mutant,which implies the deleted regions are necessary for biogenesis of the pili

challenge
flaggedBPD31:Q6TM972014-11-23 13:33:42 CSTGO:0044068 modulation by symbiont of host cellular process (P)PMID:25049409ECO:0000315 mutant phenotype evidence used in manual assertion

Fig. 1c

NTR:11338 modulation by virus of host cell type IV motility

challenge
acceptableBPD31:Q6TM972014-11-23 13:58:28 CSTGO:0039666 virion attachment to host cell pilus (P)PMID:25049409ECO:0000314 direct assay evidence used in manual assertion

Figure 4A

challenge
acceptableBPD31:Q6TM972014-11-23 13:58:28 CSTGO:1903652 modulation by virus of host cytoplasmic transport (P)PMID:25049409ECO:0000314 direct assay evidence used in manual assertion

Fig.4c

challenge

acceptable:6
unacceptable:0
requires_changes:0
flagged:1

Annotations challenged by Tsonyake

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history
updatedbyinstructorVangals,
Team Thoth
CLOTH:MTADGO:0050270 - S-adenosylhomocysteine deaminase activity (F)PMID:23968233ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1

fixed by Tsonyake
updatedbyinstructorVangals,
Team Thoth
THEMA:MTADGO:0050270 - S-adenosylhomocysteine deaminase activity (F)PMID:23968233ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1

fixed by Tsonyake
updatedbyinstructorAnjali,
Team Swanson
TRIVA:A2DMT0GO:0004575 - sucrose alpha-glucosidase activity (F)PMID:24972630ECO:0000314 direct assay evidence used in manual assertionchallengeC: 3

fixed by JSnowden
acceptableMacie002,
Team A-squared
MOUSE:PITX1GO:0035116 - embryonic hindlimb morphogenesis (P)PMID:22071103ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 2
updatedbyinstructorVangals,
Team Thoth
BACCR:MTADGO:0004000 - adenosine deaminase activity (F)PMID:23968233ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1

fixed by Tsonyake
updatedbyinstructorVangals,
Team Thoth
CHRVO:Q7NZ90GO:0004000 - adenosine deaminase activity (F)PMID:23968233ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1

fixed by Tsonyake
updatedbyinstructorJMJ,
Team RNA
HUMAN:CCNKGO:0044828 - negative regulation by host of viral genome replication (P)PMID:21555514ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1

fixed by Tsonyake
updatedbyinstructorMacie002,
Team A-squared
XENLA:Q9DG48GO:0048048 - embryonic eye morphogenesis (P)PMID:23874955ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 1

fixed by Tsonyake

6 annotations fixed by Tsonyake

What do the icons mean in the status column?

assessment icons.jpg