User:Hylandth

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
requireschanges	CANAL:Q5AJV5	2014-04-03 11:24:07 CDT	GO:0042710 biofilm formation (P)	PMID:24612417	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 7 shows that mutants with deletions in FGR23 has less sexual aggregation than the wild type	challenge
updatedbyinstructor	ARATH:PLAS2	2014-04-03 12:12:57 CDT	GO:0046028 electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity (F)	PMID:12773541	ECO:0000316 genetic interaction evidence used in manual assertion	Figure 2 shows that mutants that lack plastocyanin fluoresce less with fluorescence spectroscopy	challenge
acceptable	HUMAN:TLR9	2014-04-05 10:29:35 CDT	GO:0032640 tumor necrosis factor production (P)	PMID:23826189	ECO:0000314 direct assay evidence used in manual assertion	Fiugre 1:Two samples of mononuclear cells were collected, TLR 9 agonist was added in one sample, and absent in another. Levels of TNF Alpha were measured respectively and seen higher when induced with the agonist.	challenge
acceptable	HUMAN:TLR2	2014-04-05 10:37:20 CDT	GO:0001819 interleukin-10 production (P)	PMID:23826189	ECO:0000314 direct assay evidence used in manual assertion	Figure 2A	challenge
updatedbyinstructor	HUMAN:A1AG1	2014-04-05 11:02:45 CDT	GO:0032715 negative regulation of interleukin-6 production (P)	PMID:23973664	ECO:0000314 direct assay evidence used in manual assertion	Figure 8: Transcript analysis from cells with ORM 1 stimulation vs cells that are not ORM 1 stimulated. Less interleukin 6 transcript is made in the with ORM 1 stimulation.	challenge
acceptable	HUMAN:A1AG1	2014-04-05 11:07:35 CDT	GO:0032720 negative regulation of tumor necrosis factor production (P)	PMID:23973664	ECO:0000314 direct assay evidence used in manual assertion	Figure 8: Cells that are treated with ORM 1 stimulant for 48 hours or longer produce less TNF alpha than when no stimulation of ORM 1 is induced.	challenge
unacceptable	ARATH:MKP1	2014-04-05 12:08:30 CDT	GO:0052258 negative regulation by organism of pathogen-associated molecular pattern-induced innate immune response of other organism involved in symbiotic interaction (P)	PMID:21447069	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 2: Plants with mkp1 die when introduced to PAMP elf 26, while WT do not exude the same phenotype. When not treated with PAMP elf 26, all plants display the normal phenotype	challenge

acceptable:3
unacceptable:1
requires_changes:1
flagged:0

Annotations challenged by Hylandth

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
updatedbyinstructor	Hylandth, MichSt14A 37	ARATH:PLAS2	GO:0046028 - electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity (F)	PMID:12773541	ECO:0000316 genetic interaction evidence used in manual assertion	challenge	C: 2
requireschanges	Kaitlinm, Team Rubby ducky	VIBF1:Q5E6Z4	GO:0000155 - phosphorelay sensor kinase activity (F)	PMID:15916958	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 3

0 annotations fixed by Hylandth

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