GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
Cacao
| GO:0005524 | ATP binding | PMID:8444794 | IDA: Inferred from Direct Assay | F | ||||
| This annotation made on page: By: Ch009031 (group Team Knights) on 2012-03-11 14:24:46 CDT. | ||||||||
You must be logged in to challenge this annotation.
| Entry Type | Challenging User,Group | Time/Date | Challenge Reason | Points/Assessment |
|---|---|---|---|---|
| Challenge | Sc468020, Team Francois Jacob | 2012-04-16 09:19:29 CDT | Binding assays where it is possible to put an ID corresponding to the specific binding partner that was shown to interact directly the gene product being annotated should be annotated with the IPI code, not with IDA. | 0 |
| Challenge | Me094014, Team Alfred Hershey | 2012-03-24 15:55:29 CDT | the evidence code should be IGC (Inferred from Genomic Context) due to the consensus motif alignment in Fig 3 | 0 |
| Challenge | Ha856981, Team Martha Chase | 2012-03-24 10:28:08 CDT | alternative GO terms - GO:0016887 : ATPase activity as demonstrated from the results of photoaffinity labeling of PhoH with gamma P32 8N3ATP and the sequence homology indicated that PhoH contains nucleotide-binding motifs and as precious experiment showed, these motifs also have ATPase activity; demonstrated in the paper Iwasaki,H.,T.Shiba,K.Makino,A.Nakata,andH.Shinagawa. 1989.Overproduction,purification,andATPase activityofthe EscherichiacoliRuvB proteininvolvedinDNA repair.J. Bacteriol.171:5276-5280. pubmed ID: PMCID: PMC210362
| 0 |
| Public Assessment | Reed | 2012-03-27 19:51:20 CDT | Not an IGC; there is no genomic context for the gene. A motif is not genomic context it is an ISA (inferred by sequence alignment). Figure 9 shows that PhoH binds ATP but no binding terms are allowed in CACAO. There is no evidence in that experiment for ATPase activity. The authors even conclude that the protein has ATP-binding activity. | Unacceptable |
| Private Assessment | Reed | 2012-03-27 19:51:04 CDT | You need to be an instructor to view these notes. | Unacceptable |
| Public Assessment | E-peterson | 2012-03-27 19:48:19 CDT | You can add information as new annotations, not just corrections, especially if you are recommending different papers and different evidence codes + figures. | Requires Changes |
| Public Assessment | Emlarkin03 | 2012-03-20 20:00:01 CDT | Binding terms are not allowed. | Unacceptable |
