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SCHPO:PIF1
Contents
Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
Gene Name(s) | pfh1 (synonyms: pif1, rph1) | |
Protein Name(s) | ATP-dependent DNA helicase pfh1
DNA repair and recombination helicase pfh1 PIF1 helicase homolog RRM3/PIF1 homolog 1 | |
External Links | ||
UniProt | Q9UUA2 | |
EMBL | AF074944 CU329671 | |
PIR | T40739 T47241 | |
RefSeq | NP_596488.1 | |
ProteinModelPortal | Q9UUA2 | |
BioGrid | 277727 | |
STRING | 4896.SPBC887.14c.1 | |
iPTMnet | Q9UUA2 | |
PaxDb | Q9UUA2 | |
PRIDE | Q9UUA2 | |
EnsemblFungi | SPBC887.14c.1 | |
GeneID | 2541213 | |
KEGG | spo:SPBC887.14c | |
EuPathDB | FungiDB:SPBC887.14c | |
PomBase | SPBC887.14c | |
HOGENOM | HOG000132960 | |
InParanoid | Q9UUA2 | |
KO | K15255 | |
OMA | QRETWNI | |
PhylomeDB | Q9UUA2 | |
BRENDA | 3.6.4.12 | |
PRO | PR:Q9UUA2 | |
Proteomes | UP000002485 | |
GO | GO:0005739 GO:0000790 GO:1902377 GO:0043601 GO:0005724 GO:0005730 GO:0005634 GO:0005657 GO:0035861 GO:0005524 GO:0043141 GO:0033682 GO:0061995 GO:0016887 GO:1990814 GO:0070336 GO:0051880 GO:0003723 GO:1990518 GO:0017116 GO:0032508 GO:0006310 GO:0006260 GO:1902983 GO:0044806 GO:0043504 GO:1905467 GO:1903469 GO:0031297 GO:0000723 | |
HAMAP | MF_03176 | |
InterPro | IPR003593 IPR003840 IPR010285 IPR027417 | |
Pfam | PF02689 PF05970 | |
SMART | SM00382 | |
SUPFAM | SSF52540 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0033128 |
negative regulation of histone phosphorylation |
ECO:0000315 |
P |
Figure 3, parts B-F, show that in the absence of pfh-1 protein there was more phosphorylated histone protein indicating increased DNA damage. |
complete | |||||
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000315 |
P |
Figure 3, parts B-F, show that in the absence of pfh-1 protein there was more phosphorylated histone protein indicating increased DNA damage. |
complete | |||||
GO:0031297 |
replication fork processing |
ECO:0000315 |
P |
In figure 2, they used Cdc 20 occupancy as a way to denote pausing within the replication fork. They found that in cells where Pfh1 was absent, Cdc 20 occupancy was increased. |
complete | |||||
GO:0031297 |
replication fork processing |
ECO:0000315 |
P |
Fig. 2 B-D states how Pfh1 promotes replication fork progression at a tRNA gene, with it performing a sweepase function in promoting replication fork passage. A child term was created for this regarding progress and tRNA genes. The organism is S. pombe. |
complete | |||||
part_of |
GO:0035861 |
site of double-strand break |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0033682 |
ATP-dependent 5'-3' DNA/RNA helicase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032508 |
DNA duplex unwinding |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031297 |
replication fork processing |
ECO:0000269 |
experimental evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0017116 |
single-stranded DNA-dependent ATP-dependent DNA helicase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016887 |
ATPase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
SGD:S000004526 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005739 |
mitochondrion |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005730 |
nucleolus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005724 |
nuclear telomeric heterochromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0000003) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000255 |
match to sequence model evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0001637) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0001272) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0000339) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0000205) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0001637) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0000003) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0002021) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0001914) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(PomBase:SPCC622.09) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(PomBase:SPCC622.08c) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(PomBase:SPBC32H8.12c) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000262 |
mitochondrial chromosome |
ECO:0000305 |
curator inference used in manual assertion |
GO:0003677 GO:0005739 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:1990814 |
DNA/DNA annealing activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:1990518 |
single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity |
ECO:0000305 |
curator inference used in manual assertion |
GO:0017116 GO:0043141 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:1905467 |
positive regulation of G-quadruplex DNA unwinding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1903469 |
removal of RNA primer involved in mitotic DNA replication |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
PomBase:SPBC16D10.04c |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:1903469 |
removal of RNA primer involved in mitotic DNA replication |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
PomBase:SPAC8F11.07c |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:1902983 |
DNA strand elongation involved in mitotic DNA replication |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
occurs_at:(SO:0002021) |
Seeded From UniProt |
complete | ||
involved_in |
GO:1902983 |
DNA strand elongation involved in mitotic DNA replication |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
occurs_at:(SO:0001914) |
Seeded From UniProt |
complete | ||
involved_in |
GO:1902983 |
DNA strand elongation involved in mitotic DNA replication |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
occurs_at:(SO:0001272) |
Seeded From UniProt |
complete | ||
part_of |
GO:1902377 |
nuclear rDNA heterochromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
coincident_with:(SO:0000003) |
Seeded From UniProt |
complete | ||
enables |
GO:0070336 |
flap-structured DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0061995 |
ATP-dependent protein-DNA complex displacement activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0051880 |
G-quadruplex DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0051880 |
G-quadruplex DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
occurs_at:(SO:0001637) |
Seeded From UniProt |
complete | ||
enables |
GO:0051880 |
G-quadruplex DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
occurs_at:(SO:0000624) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0044806 |
G-quadruplex DNA unwinding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0044806 |
G-quadruplex DNA unwinding |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0044806 |
G-quadruplex DNA unwinding |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0043601 |
nuclear replisome |
ECO:0000269 |
experimental evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043504 |
mitochondrial DNA repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0043141 |
ATP-dependent 5'-3' DNA helicase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043141 |
ATP-dependent 5'-3' DNA helicase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043141 |
ATP-dependent 5'-3' DNA helicase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043141 |
ATP-dependent 5'-3' DNA helicase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
activated_by:(CHEBI:18420) |
Seeded From UniProt |
complete | ||
enables |
GO:0043141 |
ATP-dependent 5'-3' DNA helicase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001149889 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032508 |
DNA duplex unwinding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001149889 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006260 |
DNA replication |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001149889 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005657 |
replication fork |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001149889 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000723 |
telomere maintenance |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003678 |
DNA helicase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004386 |
helicase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112749 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112749 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0043141 |
ATP-dependent 5'-3' DNA helicase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112749 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000002 |
mitochondrial genome maintenance |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112749 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112749 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112749 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112749 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004386 |
helicase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005730 |
nucleolus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 McDonald, KR et al. (2016) Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity. PLoS Genet. 12 e1006238 PubMed GONUTS page
- ↑ Steinacher, R et al. (2012) The DNA helicase Pfh1 promotes fork merging at replication termination sites to ensure genome stability. Genes Dev. 26 594-602 PubMed GONUTS page
- ↑ Yu, Y et al. (2013) A proteome-wide visual screen identifies fission yeast proteins localizing to DNA double-strand breaks. DNA Repair (Amst.) 12 433-43 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 Mohammad, JB et al. (2018) The Pif1 signature motif of Pfh1 is necessary for both protein displacement and helicase unwinding activities, but is dispensable for strand-annealing activity. Nucleic Acids Res. PubMed GONUTS page
- ↑ 5.0 5.1 Zhou, JQ et al. (2002) Schizosaccharomyces pombe pfh1+ encodes an essential 5' to 3' DNA helicase that is a member of the PIF1 subfamily of DNA helicases. Mol. Biol. Cell 13 2180-91 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 6.3 6.4 Ryu, GH et al. (2004) Genetic and biochemical analyses of Pfh1 DNA helicase function in fission yeast. Nucleic Acids Res. 32 4205-16 PubMed GONUTS page
- ↑ 7.0 7.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 Pinter, SF et al. (2008) The Schizosaccharomyces pombe Pfh1p DNA helicase is essential for the maintenance of nuclear and mitochondrial DNA. Mol. Cell. Biol. 28 6594-608 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 9.3 9.4 9.5 Wallgren, M et al. (2016) G-rich telomeric and ribosomal DNA sequences from the fission yeast genome form stable G-quadruplex DNA structures in vitro and are unwound by the Pfh1 DNA helicase. Nucleic Acids Res. 44 6213-31 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 Tanaka, H et al. (2002) The fission yeast pfh1(+) gene encodes an essential 5' to 3' DNA helicase required for the completion of S-phase. Nucleic Acids Res. 30 4728-39 PubMed GONUTS page
- ↑ 11.0 11.1 11.2 Sabouri, N et al. (2014) The essential Schizosaccharomyces pombe Pfh1 DNA helicase promotes fork movement past G-quadruplex motifs to prevent DNA damage. BMC Biol. 12 101 PubMed GONUTS page
- ↑ 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 Sabouri, N et al. (2012) DNA replication through hard-to-replicate sites, including both highly transcribed RNA Pol II and Pol III genes, requires the S. pombe Pfh1 helicase. Genes Dev. 26 581-93 PubMed GONUTS page
- ↑ Audry, J et al. (2015) RPA prevents G-rich structure formation at lagging-strand telomeres to allow maintenance of chromosome ends. EMBO J. 34 1942-58 PubMed GONUTS page
- ↑ 14.0 14.1 14.2 14.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
a
d
- Dikarya
- GO:1990814 ! DNA/DNA annealing activity
- GO:0003677 ! DNA binding
- GO:0006974 ! DNA damage response
- GO:0032508 ! DNA duplex unwinding
- GO:0003678 ! DNA helicase activity
- GO:0006310 ! DNA recombination
- GO:0006281 ! DNA repair
- GO:0006260 ! DNA replication
- GO:1902983 ! DNA strand elongation involved in mitotic DNA replication
m
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