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MOUSE:PRDM1
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Prdm1 (synonyms: Blimp1) | |
Protein Name(s) | PR domain zinc finger protein 1
B lymphocyte-induced maturation protein 1 Blimp-1 Beta-interferon gene positive regulatory domain I-binding factor PR domain-containing protein 1 | |
External Links | ||
UniProt | Q60636 | |
EMBL | U08185 AF305539 AF305534 AF305535 AF305536 AF305537 AF305538 AK077622 AK149344 BC129801 | |
CCDS | CCDS23825.2 | |
PIR | A53503 | |
RefSeq | NP_031574.2 XP_006512565.1 XP_006512566.1 XP_006512568.1 | |
UniGene | Mm.4800 | |
ProteinModelPortal | Q60636 | |
SMR | Q60636 | |
BioGrid | 198355 | |
IntAct | Q60636 | |
STRING | 10090.ENSMUSP00000101129 | |
PhosphoSite | Q60636 | |
PaxDb | Q60636 | |
PRIDE | Q60636 | |
DNASU | 12142 | |
Ensembl | ENSMUST00000039174 ENSMUST00000105490 | |
GeneID | 12142 | |
KEGG | mmu:12142 | |
UCSC | uc007ezu.2 uc007ezv.2 | |
CTD | 639 | |
MGI | MGI:99655 | |
eggNOG | COG5048 | |
GeneTree | ENSGT00740000115517 | |
HOGENOM | HOG000059670 | |
HOVERGEN | HBG053670 | |
InParanoid | Q60636 | |
OMA | TGYKTLP | |
OrthoDB | EOG7060Q3 | |
PhylomeDB | Q60636 | |
TreeFam | TF316545 | |
NextBio | 280465 | |
PRO | PR:Q60636 | |
Proteomes | UP000000589 | |
Bgee | Q60636 | |
CleanEx | MM_PRDM1 | |
Genevestigator | Q60636 | |
GO | GO:0005737 GO:0005634 GO:0042826 GO:0046872 GO:0008168 GO:0043565 GO:0045165 GO:0001892 GO:0042462 GO:0007281 GO:0001701 GO:0060576 GO:0001893 GO:0030889 GO:0010629 GO:0031665 GO:0000122 GO:0045579 GO:0010628 GO:0009791 GO:0006351 GO:0060707 | |
Gene3D | 3.30.160.60 | |
InterPro | IPR016608 IPR001214 IPR007087 IPR015880 IPR013087 | |
PANTHER | PTHR11389:SF339 | |
Pfam | PF00856 | |
PIRSF | PIRSF013212 | |
SMART | SM00317 SM00355 | |
PROSITE | PS50280 PS00028 PS50157 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0046549 |
retinal cone cell development |
ECO:0000315 |
P |
Fig 2j+l |
complete | |||||
GO:0046548 |
retinal rod cell development |
ECO:0000315 |
P |
Fig 2h+w |
complete | |||||
GO:0046532 |
regulation of photoreceptor cell differentiation |
ECO:0000315 |
P |
Fig 3F and reduced numbers of differentiated photoreceptors in blimp1 knockouts |
complete | |||||
GO:0010629 |
negative regulation of gene expression |
ECO:0000315 |
P |
Fig 6a |
complete | |||||
GO:0010628 |
positive regulation of gene expression |
ECO:0000315 |
P |
Fig 6b |
complete | |||||
GO:0032582 |
negative regulation of gene-specific transcription |
ECO:0000314 |
P |
Fig 6d |
complete | |||||
GO:0003677 |
DNA binding |
ECO:0000314 |
F |
Fig 6e |
complete | |||||
GO:0016566 |
specific transcriptional repressor activity |
ECO:0000314 |
F |
Fig 6d |
complete | |||||
GO:0060040 |
retinal bipolar neuron differentiation |
ECO:0000315 |
P |
Fig 7b+d |
complete | |||||
enables |
GO:1990841 |
promoter-specific chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0033082 |
regulation of extrathymic T cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051136 |
regulation of NK T cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032823 |
regulation of natural killer cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045165 |
cell fate commitment |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:99655 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2384854 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0042826 |
histone deacetylase binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:99655 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0031490 |
chromatin DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:3588194 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:99655 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0035625 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001818762 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000977 |
RNA polymerase II regulatory region sequence-specific DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:3588194 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:1990654 |
sebum secreting cell proliferation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0060976 |
coronary vasculature development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0060707 |
trophoblast giant cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:5439582 |
P |
occurs_in:(EMAPA:16042) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0060576 |
intestinal epithelial cell development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0048844 |
artery morphogenesis |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:98493 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0048844 |
artery morphogenesis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045165 |
cell fate commitment |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3586884 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045165 |
cell fate commitment |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0042462 |
eye photoreceptor cell development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605621,MGI:MGI:4881674 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0042462 |
eye photoreceptor cell development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605621,MGI:MGI:3608904 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0042127 |
regulation of cell population proliferation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0035904 |
aorta development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0010629 |
negative regulation of gene expression |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0010628 |
positive regulation of gene expression |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0009791 |
post-embryonic development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007281 |
germ cell development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1890546 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0003281 |
ventricular septum development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0003279 |
cardiac septum development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0003170 |
heart valve development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0001893 |
maternal placenta development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
results_in_development_of:(EMAPA:35689) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0001892 |
embryonic placenta development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
results_in_development_of:(EMAPA:16042) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0001763 |
morphogenesis of a branching structure |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0001701 |
in utero embryonic development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3605483 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0001227 |
DNA-binding transcription repressor activity, RNA polymerase II-specific |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(MGI:MGI:88401) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O75626 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0001227 |
DNA-binding transcription repressor activity, RNA polymerase II-specific |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O75626 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O75626 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O75626 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045579 |
positive regulation of B cell differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042826 |
histone deacetylase binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0030889 |
negative regulation of B cell proliferation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
NOT|acts_upstream_of_or_within |
GO:0045579 |
positive regulation of B cell differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0042826 |
histone deacetylase binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0031665 |
negative regulation of lipopolysaccharide-mediated signaling pathway |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0030889 |
negative regulation of B cell proliferation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(MGI:MGI:99655) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0002376 |
immune system process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032259 |
methylation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002250 |
adaptive immune response |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007275 |
multicellular organism development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0008168 |
methyltransferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045087 |
innate immune response |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Katoh, K et al. (2010) Blimp1 suppresses Chx10 expression in differentiating retinal photoreceptor precursors to ensure proper photoreceptor development. J. Neurosci. 30 6515-26 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Mackay, LK et al. (2016) Hobit and Blimp1 instruct a universal transcriptional program of tissue residency in lymphocytes. Science 352 459-63 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 4.0 4.1 Horsley, V et al. (2006) Blimp1 defines a progenitor population that governs cellular input to the sebaceous gland. Cell 126 597-609 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 Li, Y et al. (2015) Global genetic analysis in mice unveils central role for cilia in congenital heart disease. Nature 521 520-4 PubMed GONUTS page
- ↑ Mould, A et al. (2012) Blimp1/Prdm1 governs terminal differentiation of endovascular trophoblast giant cells and defines multipotent progenitors in the developing placenta. Genes Dev. 26 2063-74 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 Harper, J et al. (2011) The transcriptional repressor Blimp1/Prdm1 regulates postnatal reprogramming of intestinal enterocytes. Proc. Natl. Acad. Sci. U.S.A. 108 10585-90 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 Vincent, SD et al. (2014) Prdm1 functions in the mesoderm of the second heart field, where it interacts genetically with Tbx1, during outflow tract morphogenesis in the mouse embryo. Hum. Mol. Genet. 23 5087-101 PubMed GONUTS page
- ↑ Ohinata, Y et al. (2005) Blimp1 is a critical determinant of the germ cell lineage in mice. Nature 436 207-13 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 Vincent, SD et al. (2005) The zinc finger transcriptional repressor Blimp1/Prdm1 is dispensable for early axis formation but is required for specification of primordial germ cells in the mouse. Development 132 1315-25 PubMed GONUTS page
- ↑ Yamaji, M et al. (2008) Critical function of Prdm14 for the establishment of the germ cell lineage in mice. Nat. Genet. 40 1016-22 PubMed GONUTS page
- ↑ West, JA et al. (2009) A role for Lin28 in primordial germ-cell development and germ-cell malignancy. Nature 460 909-13 PubMed GONUTS page
- ↑ 13.00 13.01 13.02 13.03 13.04 13.05 13.06 13.07 13.08 13.09 13.10 Schmidt, D et al. (2008) Blimp-1Deltaexon7: a naturally occurring Blimp-1 deletion mutant with auto-regulatory potential. Exp. Cell Res. 314 3614-27 PubMed GONUTS page
a
c
d
e
i
m
n
- GO:0000122 ! negative regulation of transcription by RNA polymerase II
- GO:0031665 ! negative regulation of lipopolysaccharide-mediated signaling pathway
- GO:0010629 ! negative regulation of gene expression
- GO:0032582 ! negative regulation of gene-specific transcription
- GO:0030889 ! negative regulation of B cell proliferation
- GO:0003676 ! nucleic acid binding
- GO:0005634 ! nucleus
p
r
- GO:0046532 ! regulation of photoreceptor cell differentiation
- GO:0051136 ! regulation of NK T cell differentiation
- GO:0042127 ! regulation of cell population proliferation
- GO:0032823 ! regulation of natural killer cell differentiation
- GO:0033082 ! regulation of extrathymic T cell differentiation
- GO:0060040 ! retinal bipolar neuron differentiation
- GO:0046549 ! retinal cone cell development
- GO:0046548 ! retinal rod cell development
- GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding
- GO:0000978 ! RNA polymerase II cis-regulatory region sequence-specific DNA binding
- Rodentia
s