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MOUSE:PRDM1

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Prdm1 (synonyms: Blimp1)
Protein Name(s) PR domain zinc finger protein 1

B lymphocyte-induced maturation protein 1 Blimp-1 Beta-interferon gene positive regulatory domain I-binding factor PR domain-containing protein 1

External Links
UniProt Q60636
EMBL U08185
AF305539
AF305534
AF305535
AF305536
AF305537
AF305538
AK077622
AK149344
BC129801
CCDS CCDS23825.2
PIR A53503
RefSeq NP_031574.2
XP_006512565.1
XP_006512566.1
XP_006512568.1
UniGene Mm.4800
ProteinModelPortal Q60636
SMR Q60636
BioGrid 198355
IntAct Q60636
STRING 10090.ENSMUSP00000101129
PhosphoSite Q60636
PaxDb Q60636
PRIDE Q60636
DNASU 12142
Ensembl ENSMUST00000039174
ENSMUST00000105490
GeneID 12142
KEGG mmu:12142
UCSC uc007ezu.2
uc007ezv.2
CTD 639
MGI MGI:99655
eggNOG COG5048
GeneTree ENSGT00740000115517
HOGENOM HOG000059670
HOVERGEN HBG053670
InParanoid Q60636
OMA TGYKTLP
OrthoDB EOG7060Q3
PhylomeDB Q60636
TreeFam TF316545
NextBio 280465
PRO PR:Q60636
Proteomes UP000000589
Bgee Q60636
CleanEx MM_PRDM1
Genevestigator Q60636
GO GO:0005737
GO:0005634
GO:0042826
GO:0046872
GO:0008168
GO:0043565
GO:0045165
GO:0001892
GO:0042462
GO:0007281
GO:0001701
GO:0060576
GO:0001893
GO:0030889
GO:0010629
GO:0031665
GO:0000122
GO:0045579
GO:0010628
GO:0009791
GO:0006351
GO:0060707
Gene3D 3.30.160.60
InterPro IPR016608
IPR001214
IPR007087
IPR015880
IPR013087
PANTHER PTHR11389:SF339
Pfam PF00856
PIRSF PIRSF013212
SMART SM00317
SM00355
PROSITE PS50280
PS00028
PS50157

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0046549

retinal cone cell development

PMID:20463215[1]

ECO:0000315

P

Fig 2j+l

complete

GO:0046548

retinal rod cell development

PMID:20463215[1]

ECO:0000315

P

Fig 2h+w

complete

GO:0046532

regulation of photoreceptor cell differentiation

PMID:20463215[1]

ECO:0000315

P

Fig 3F and reduced numbers of differentiated photoreceptors in blimp1 knockouts

complete

GO:0010629

negative regulation of gene expression

PMID:20463215[1]

ECO:0000315

P

Fig 6a

complete

GO:0010628

positive regulation of gene expression

PMID:20463215[1]

ECO:0000315

P

Fig 6b

complete

GO:0032582

negative regulation of gene-specific transcription

PMID:20463215[1]

ECO:0000314

P

Fig 6d

complete

GO:0003677

DNA binding

PMID:20463215[1]

ECO:0000314

F

Fig 6e

complete

GO:0016566

specific transcriptional repressor activity

PMID:20463215[1]

ECO:0000314

F

Fig 6d

complete

GO:0060040

retinal bipolar neuron differentiation

PMID:20463215[1]

ECO:0000315

P

Fig 7b+d

complete

enables

GO:1990841

promoter-specific chromatin binding

PMID:27102484[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0033082

regulation of extrathymic T cell differentiation

PMID:27102484[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051136

regulation of NK T cell differentiation

PMID:27102484[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032823

regulation of natural killer cell differentiation

PMID:27102484[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045165

cell fate commitment

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:99655
PANTHER:PTN000421213

P

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2384854
MGI:MGI:99655
PANTHER:PTN001818762
UniProtKB:Q9NQV7
UniProtKB:Q9NQX1
UniProtKB:Q9Y462

F

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:99655
PANTHER:PTN000421213

F

Seeded From UniProt

complete

enables

GO:0031490

chromatin DNA binding

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:3588194
PANTHER:PTN001818762

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:99655
PANTHER:PTN000421213
UniProtKB:F1NKI2
UniProtKB:O75626
WB:WBGene00003847

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0035625
MGI:MGI:1920093
MGI:MGI:1930121
MGI:MGI:2448528
MGI:MGI:2684938
MGI:MGI:3588194
MGI:MGI:99655
PANTHER:PTN001818762
RGD:1594531
RGD:619929
UniProtKB:Q13029
UniProtKB:Q9H4Q4
UniProtKB:Q9NQX1
UniProtKB:Q9Y462
WB:WBGene00003847

C

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001818762
ZFIN:ZDB-GENE-030131-2193

F

Seeded From UniProt

complete

enables

GO:0000977

RNA polymerase II regulatory region sequence-specific DNA binding

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:3588194
PANTHER:PTN001818762
UniProtKB:Q13029

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1990654

sebum secreting cell proliferation

PMID:16901790[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060976

coronary vasculature development

PMID:25807483[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060707

trophoblast giant cell differentiation

PMID:22987638[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:5439582

P

occurs_in:(EMAPA:16042)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060576

intestinal epithelial cell development

PMID:21670299[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483
MGI:MGI:3605621

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048844

artery morphogenesis

PMID:24821700[8]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:98493

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048844

artery morphogenesis

PMID:24821700[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483
MGI:MGI:3605621

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045165

cell fate commitment

PMID:15937476[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3586884

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045165

cell fate commitment

PMID:15750184[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0042462

eye photoreceptor cell development

PMID:20463215[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605621,MGI:MGI:4881674

P

  • occurs_in:(EMAPA:17168)
  • results_in_development_of:(CL:0000287)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0042462

eye photoreceptor cell development

PMID:20463215[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605621,MGI:MGI:3608904

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0042127

regulation of cell population proliferation

PMID:24821700[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483
MGI:MGI:3605621

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0035904

aorta development

PMID:25807483[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010629

negative regulation of gene expression

PMID:21670299[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483
MGI:MGI:3605621

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010628

positive regulation of gene expression

PMID:18622394[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0009791

post-embryonic development

PMID:21670299[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483
MGI:MGI:3605621

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007281

germ cell development

PMID:19578360[12]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1890546

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O75626

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16901790[4]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(CL:0002559)
  • part_of:(EMAPA:18771)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0003281

ventricular septum development

PMID:25807483[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0003279

cardiac septum development

PMID:25807483[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0003170

heart valve development

PMID:25807483[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001893

maternal placenta development

PMID:15750184[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483

P

results_in_development_of:(EMAPA:35689)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001892

embryonic placenta development

PMID:15750184[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483

P

results_in_development_of:(EMAPA:16042)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001763

morphogenesis of a branching structure

PMID:24821700[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483
MGI:MGI:3605621

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001701

in utero embryonic development

PMID:15750184[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3605483

P

Seeded From UniProt

complete

enables

GO:0001227

DNA-binding transcription repressor activity, RNA polymerase II-specific

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O75626

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O75626

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:20463215[1]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(MGI:MGI:88401)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0000122

negative regulation of transcription by RNA polymerase II

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O75626

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O75626
ensembl:ENSP00000358092

C

Seeded From UniProt

complete

enables

GO:0001227

DNA-binding transcription repressor activity, RNA polymerase II-specific

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O75626
ensembl:ENSP00000358092

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O75626
ensembl:ENSP00000358092

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O75626
ensembl:ENSP00000358092

P

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR013087

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045579

positive regulation of B cell differentiation

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0030889

negative regulation of B cell proliferation

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

NOT|acts_upstream_of_or_within

GO:0045579

positive regulation of B cell differentiation

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0031665

negative regulation of lipopolysaccharide-mediated signaling pathway

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0030889

negative regulation of B cell proliferation

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:18845144[13]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(MGI:MGI:99655)

Seeded From UniProt

complete

involved_in

GO:0002376

immune system process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0391

P

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

involved_in

GO:0032259

methylation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0489

P

Seeded From UniProt

complete

involved_in

GO:0002250

adaptive immune response

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1064

P

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0008168

methyltransferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0489

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0045087

innate immune response

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0399

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Katoh, K et al. (2010) Blimp1 suppresses Chx10 expression in differentiating retinal photoreceptor precursors to ensure proper photoreceptor development. J. Neurosci. 30 6515-26 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 Mackay, LK et al. (2016) Hobit and Blimp1 instruct a universal transcriptional program of tissue residency in lymphocytes. Science 352 459-63 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  4. 4.0 4.1 Horsley, V et al. (2006) Blimp1 defines a progenitor population that governs cellular input to the sebaceous gland. Cell 126 597-609 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 Li, Y et al. (2015) Global genetic analysis in mice unveils central role for cilia in congenital heart disease. Nature 521 520-4 PubMed GONUTS page
  6. Mould, A et al. (2012) Blimp1/Prdm1 governs terminal differentiation of endovascular trophoblast giant cells and defines multipotent progenitors in the developing placenta. Genes Dev. 26 2063-74 PubMed GONUTS page
  7. 7.0 7.1 7.2 Harper, J et al. (2011) The transcriptional repressor Blimp1/Prdm1 regulates postnatal reprogramming of intestinal enterocytes. Proc. Natl. Acad. Sci. U.S.A. 108 10585-90 PubMed GONUTS page
  8. 8.0 8.1 8.2 8.3 Vincent, SD et al. (2014) Prdm1 functions in the mesoderm of the second heart field, where it interacts genetically with Tbx1, during outflow tract morphogenesis in the mouse embryo. Hum. Mol. Genet. 23 5087-101 PubMed GONUTS page
  9. Ohinata, Y et al. (2005) Blimp1 is a critical determinant of the germ cell lineage in mice. Nature 436 207-13 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 Vincent, SD et al. (2005) The zinc finger transcriptional repressor Blimp1/Prdm1 is dispensable for early axis formation but is required for specification of primordial germ cells in the mouse. Development 132 1315-25 PubMed GONUTS page
  11. Yamaji, M et al. (2008) Critical function of Prdm14 for the establishment of the germ cell lineage in mice. Nat. Genet. 40 1016-22 PubMed GONUTS page
  12. West, JA et al. (2009) A role for Lin28 in primordial germ-cell development and germ-cell malignancy. Nature 460 909-13 PubMed GONUTS page
  13. 13.00 13.01 13.02 13.03 13.04 13.05 13.06 13.07 13.08 13.09 13.10 Schmidt, D et al. (2008) Blimp-1Deltaexon7: a naturally occurring Blimp-1 deletion mutant with auto-regulatory potential. Exp. Cell Res. 314 3614-27 PubMed GONUTS page