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MOUSE:IRF1
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Irf1 | |
Protein Name(s) | Interferon regulatory factor 1
IRF-1 | |
External Links | ||
UniProt | P15314 | |
EMBL | M21065 BC003821 | |
CCDS | CCDS24686.1 | |
PIR | A31595 | |
RefSeq | NP_001152868.1 NP_032416.1 | |
UniGene | Mm.105218 | |
PDB | 1IF1 | |
PDBsum | 1IF1 | |
ProteinModelPortal | P15314 | |
SMR | P15314 | |
BioGrid | 200784 | |
IntAct | P15314 | |
PhosphoSite | P15314 | |
MaxQB | P15314 | |
PRIDE | P15314 | |
Ensembl | ENSMUST00000019043 ENSMUST00000108920 | |
GeneID | 16362 | |
KEGG | mmu:16362 | |
UCSC | uc007iww.2 | |
CTD | 3659 | |
MGI | MGI:96590 | |
eggNOG | NOG42582 | |
HOGENOM | HOG000037937 | |
HOVERGEN | HBG003455 | |
InParanoid | P15314 | |
KO | K09444 | |
OMA | CKEEPEV | |
OrthoDB | EOG72ZCFD | |
PhylomeDB | P15314 | |
TreeFam | TF328512 | |
Reactome | REACT_198521 REACT_198649 REACT_198660 | |
EvolutionaryTrace | P15314 | |
NextBio | 289466 | |
PRO | PR:P15314 | |
Proteomes | UP000000589 | |
Bgee | P15314 | |
CleanEx | MM_IRF1 | |
ExpressionAtlas | P15314 | |
Genevestigator | P15314 | |
GO | GO:0005737 GO:0000790 GO:0005634 GO:0003677 GO:0000978 GO:0043565 GO:0003700 GO:0006915 GO:0043374 GO:0007050 GO:0035458 GO:0071260 GO:0051607 GO:0060333 GO:0045590 GO:0045629 GO:0045892 GO:0032728 GO:0045084 GO:0032825 GO:0045627 GO:0045944 GO:0045893 GO:0032481 GO:0002819 GO:2000564 GO:0010468 GO:0045088 GO:0034124 GO:0006351 | |
Gene3D | 1.10.10.10 | |
InterPro | IPR017431 IPR019817 IPR001346 IPR011991 | |
Pfam | PF00605 | |
PIRSF | PIRSF038196 | |
PRINTS | PR00267 | |
SMART | SM00348 | |
PROSITE | PS00601 PS51507 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
involved_in |
GO:2000564 |
regulation of CD8-positive, alpha-beta T cell proliferation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0060333 |
interferon-gamma-mediated signaling pathway |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045590 |
negative regulation of regulatory T cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0034124 |
regulation of MyD88-dependent toll-like receptor signaling pathway |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032481 |
positive regulation of type I interferon production |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007050 |
cell cycle arrest |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006915 |
apoptotic process |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1096873 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0002376 |
immune system process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1096873 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1859212 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0071375 |
cellular response to peptide hormone stimulus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0071356 |
cellular response to tumor necrosis factor |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0071347 |
cellular response to interleukin-1 |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0060416 |
response to growth hormone |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0051607 |
defense response to virus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
|
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045084 |
positive regulation of interleukin-12 biosynthetic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857205 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045084 |
positive regulation of interleukin-12 biosynthetic process |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_input:(MGI:MGI:1355313) |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0043374 |
CD8-positive, alpha-beta T cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857205 |
P |
occurs_in:(EMAPA:18768)|occurs_in:(EMAPA:18767)|occurs_in:(EMAPA:16332) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0042532 |
negative regulation of tyrosine phosphorylation of STAT protein |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0035458 |
cellular response to interferon-beta |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0010942 |
positive regulation of cell death |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0010468 |
regulation of gene expression |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857205 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0007249 |
I-kappaB kinase/NF-kappaB signaling |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007050 |
cell cycle arrest |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0006915 |
apoptotic process |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000305 |
curator inference used in manual assertion |
GO:0003700 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:2920 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_regulation_target:(MGI:MGI:1355313) |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071260 |
cellular response to mechanical stimulus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0035458 |
cellular response to interferon-beta |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007050 |
cell cycle arrest |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006915 |
apoptotic process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P10914 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006915 |
apoptotic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0008285 |
negative regulation of cell population proliferation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0044212 |
transcription regulatory region DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0050776 |
regulation of immune response |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045629 |
negative regulation of T-helper 2 cell differentiation |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045627 |
positive regulation of T-helper 1 cell differentiation |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045088 |
regulation of innate immune response |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032825 |
positive regulation of natural killer cell differentiation |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002819 |
regulation of adaptive immune response |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002376 |
immune system process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045087 |
innate immune response |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Brien, JD et al. (2011) Interferon regulatory factor-1 (IRF-1) shapes both innate and CD8(+) T cell immune responses against West Nile virus infection. PLoS Pathog. 7 e1002230 PubMed GONUTS page
- ↑ Dixit, E et al. (2010) Peroxisomes are signaling platforms for antiviral innate immunity. Cell 141 668-81 PubMed GONUTS page
- ↑ Stirnweiss, A et al. (2010) IFN regulatory factor-1 bypasses IFN-mediated antiviral effects through viperin gene induction. J. Immunol. 184 5179-85 PubMed GONUTS page
- ↑ 4.0 4.1 Fragale, A et al. (2008) IFN regulatory factor-1 negatively regulates CD4+ CD25+ regulatory T cell differentiation by repressing Foxp3 expression. J. Immunol. 181 1673-82 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 Negishi, H et al. (2006) Evidence for licensing of IFN-gamma-induced IFN regulatory factor 1 transcription factor by MyD88 in Toll-like receptor-dependent gene induction program. Proc. Natl. Acad. Sci. U.S.A. 103 15136-41 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 Byun, SJ et al. (2007) IFN-gamma upregulates expression of the mouse complement C1rA gene in keratinocytes via IFN-regulatory factor-1. J. Invest. Dermatol. 127 1187-96 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 8.4 8.5 Liu, J et al. (2003) Differential regulation of interleukin (IL)-12 p35 and p40 gene expression and interferon (IFN)-gamma-primed IL-12 production by IFN regulatory factor 1. J. Exp. Med. 198 1265-76 PubMed GONUTS page
- ↑ 9.0 9.1 Ohteki, T et al. (2001) Overexpression of Bcl-2 differentially restores development of thymus-derived CD4-8+ T cells and intestinal intraepithelial T cells in IFN-regulatory factor-1-deficient mice. J. Immunol. 166 6509-13 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 Taniguchi, T et al. (2001) IRF family of transcription factors as regulators of host defense. Annu. Rev. Immunol. 19 623-55 PubMed GONUTS page
c
- GO:0007249 ! canonical NF-kappaB signal transduction
- GO:0043374 ! CD8-positive, alpha-beta T cell differentiation
- GO:0071375 ! cellular response to peptide hormone stimulus
- GO:0071260 ! cellular response to mechanical stimulus
- GO:0035458 ! cellular response to interferon-beta
- GO:0071347 ! cellular response to interleukin-1
- GO:0071356 ! cellular response to tumor necrosis factor
- GO:0007050 ! cell cycle arrest
- Chordata
- Craniata
- GO:0005737 ! cytoplasm
d
g
n
- GO:0008285 ! negative regulation of cell population proliferation
- GO:0045892 ! negative regulation of DNA-templated transcription
- GO:0045629 ! negative regulation of T-helper 2 cell differentiation
- GO:0045590 ! negative regulation of regulatory T cell differentiation
- GO:0042532 ! negative regulation of tyrosine phosphorylation of STAT protein
- GO:0000790 ! nuclear chromatin
- GO:0005634 ! nucleus
p
- GO:0032728 ! positive regulation of interferon-beta production
- GO:0045893 ! positive regulation of DNA-templated transcription
- GO:0032481 ! positive regulation of type I interferon production
- GO:0045627 ! positive regulation of T-helper 1 cell differentiation
- GO:0045944 ! positive regulation of transcription by RNA polymerase II
- GO:0032825 ! positive regulation of natural killer cell differentiation
- GO:0045084 ! positive regulation of interleukin-12 biosynthetic process
r
- GO:2000564 ! regulation of CD8-positive, alpha-beta T cell proliferation
- GO:0010468 ! regulation of gene expression
- GO:0034124 ! regulation of MyD88-dependent toll-like receptor signaling pathway
- GO:0045088 ! regulation of innate immune response
- GO:0050776 ! regulation of immune response
- GO:0006355 ! regulation of DNA-templated transcription
- GO:0002819 ! regulation of adaptive immune response
- GO:0060416 ! response to growth hormone
- GO:0000978 ! RNA polymerase II cis-regulatory region sequence-specific DNA binding
- Rodentia
t